Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TMEM30CP-203ENST00000637814 1035 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC003973.3-201ENST00000624863 2822 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SKA3Q8IX90 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 AC000374.1-201ENST00000434698 1745 ntBASIC4.75□□□□□ -1.65
SKA3Q8IX90 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SKA3Q8IX90 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AL929601.4-201ENST00000613011 1341 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 ADAM5-202ENST00000399789 1942 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 AL035696.2-201ENST00000407941 709 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 PRUNEP1-201ENST00000425846 705 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AL121776.1-201ENST00000429337 372 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 TPTE2P1-204ENST00000435256 593 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC092447.2-201ENST00000435487 669 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 RN7SL184P-201ENST00000488308 297 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 MTND2P17-201ENST00000550281 688 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 BLZF2P-201ENST00000553776 1130 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC011445.2-201ENST00000599274 173 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 SUGT1P3-202ENST00000604259 383 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 IGLCOR22-2-201ENST00000605398 313 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC007204.2-201ENST00000615022 616 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC005840.5-201ENST00000619166 599 ntBASIC4.74□□□□□ -1.65
SKA3Q8IX90 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SKA3Q8IX90 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SKA3Q8IX90 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SKA3Q8IX90 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AL513548.1-201ENST00000562904 1724 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 MTHFD2P5-201ENST00000320415 844 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 MIR133B-201ENST00000362210 119 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 RNU4-44P-201ENST00000363050 141 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 RNA5SP335-201ENST00000363817 110 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 RNA5SP132-201ENST00000364725 118 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 RNU1-77P-201ENST00000390868 162 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 AL359643.1-201ENST00000404109 423 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 RN7SKP206-201ENST00000410823 293 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 SETP10-201ENST00000424368 814 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 MTND6P5-201ENST00000448266 512 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 RPL7P45-201ENST00000455851 743 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 SEPT10P1-201ENST00000517342 1162 ntBASIC4.73□□□□□ -1.65
SKA3Q8IX90 CASC19-203ENST00000523510 575 ntTSL 3 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC4.73□□□□□ -1.65
SKA3Q8IX90 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms