Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MTATP6P26-201ENST00000445926 662 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 GEMIN2P1-201ENST00000454246 752 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 UBFD1P1-201ENST00000473259 814 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 OR11I1P-201ENST00000486033 954 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 BOLA3P3-201ENST00000505182 232 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC078899.1-201ENST00000521432 1185 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AP003717.3-201ENST00000544832 1180 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL049830.4-201ENST00000555149 351 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 MTCYBP23-201ENST00000558717 1102 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 MIR4776-2-201ENST00000580204 80 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 RN7SL753P-201ENST00000581238 290 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC025811.1-201ENST00000604312 472 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL450336.1-201ENST00000605180 586 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL365400.2-201ENST00000605604 902 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC145423.1-201ENST00000605712 336 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC025175.1-201ENST00000606482 759 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC019131.2-201ENST00000609071 870 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL359513.1-201ENST00000614364 557 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AL031658.2-201ENST00000616850 651 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC241377.1-201ENST00000619797 406 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 PARP4P2-201ENST00000446672 3326 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC083837.1-201ENST00000565297 2994 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 AC018628.1-201ENST00000624147 3819 ntBASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
PTCHD3Q3KNS1 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
PTCHD3Q3KNS1 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 RNA5SP284-201ENST00000384547 118 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL034403.1-201ENST00000399414 885 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 MIR1203-201ENST00000408812 85 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 HIGD1AP15-201ENST00000416198 280 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 RPA2P2-201ENST00000419698 796 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 BX284632.2-201ENST00000421091 399 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 NANOGP5-201ENST00000424456 877 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 Z84478.1-201ENST00000438230 1219 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC245047.2-201ENST00000441060 530 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL512605.1-202ENST00000441919 381 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL359955.2-201ENST00000445380 353 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC099063.2-201ENST00000446360 662 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 SYPL1-205ENST00000470347 1193 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC007998.1-201ENST00000474156 672 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 GAPDHP71-201ENST00000511530 1003 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 CYB5AP5-201ENST00000549779 389 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 HMGN2P47-201ENST00000559378 272 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC012170.3-201ENST00000560159 297 ntTSL 2 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AP001007.3-201ENST00000560744 356 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC012146.2-201ENST00000576545 416 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 LINC01320-205ENST00000604250 857 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 ELOCP35-201ENST00000604289 336 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 RNU4-5P-201ENST00000607255 135 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL136131.3-201ENST00000607600 188 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 BANCR-201ENST00000624238 473 ntTSL 2 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms