Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC6.76□□□□□ -1.33
HOXC9P31274 AP006289.1-201ENST00000538089 277 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
HOXC9P31274 AC091042.1-201ENST00000579213 173 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC6.76□□□□□ -1.33
HOXC9P31274 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.76□□□□□ -1.33
HOXC9P31274 AC068790.4-201ENST00000602474 263 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 AC105105.5-201ENST00000622635 1294 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 AC010435.1-201ENST00000623353 1177 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.76□□□□□ -1.33
HOXC9P31274 MIR7641-1-201ENST00000627518 61 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC6.76□□□□□ -1.33
HOXC9P31274 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
HOXC9P31274 AC068733.2-201ENST00000605434 1418 ntBASIC6.76□□□□□ -1.33
HOXC9P31274 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC073365.1-203ENST00000641055 1992 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 CYLD-201ENST00000311559 5371 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 RNU1-32P-201ENST00000363937 159 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 SNORA2.3-201ENST00000383920 135 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 AC090018.1-201ENST00000434369 367 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC016772.1-201ENST00000444170 1261 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC6.75□□□□□ -1.33
HOXC9P31274 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.75□□□□□ -1.33
HOXC9P31274 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC6.75□□□□□ -1.33
HOXC9P31274 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC019322.1-201ENST00000571869 389 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 AC005377.1-201ENST00000605126 456 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 AC093388.1-201ENST00000609166 430 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.75□□□□□ -1.33
HOXC9P31274 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.75□□□□□ -1.33
HOXC9P31274 MAPK6PS2-201ENST00000379571 2060 ntBASIC6.75□□□□□ -1.33
HOXC9P31274 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
HOXC9P31274 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
HOXC9P31274 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.74□□□□□ -1.33
HOXC9P31274 AC010132.2-201ENST00000295493 1043 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
HOXC9P31274 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 RN7SKP100-201ENST00000411258 284 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.74□□□□□ -1.33
HOXC9P31274 AC092570.3-201ENST00000420113 693 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 RPL7AP49-201ENST00000429522 581 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 AL591438.1-201ENST00000433508 581 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.74□□□□□ -1.33
HOXC9P31274 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 MTCO3P17-201ENST00000443775 513 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC6.74□□□□□ -1.33
HOXC9P31274 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.74□□□□□ -1.33
HOXC9P31274 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC6.74□□□□□ -1.33
HOXC9P31274 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.74□□□□□ -1.33
HOXC9P31274 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.74□□□□□ -1.33
HOXC9P31274 EIF1P5-201ENST00000585002 234 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 RPL27-207ENST00000590864 569 ntTSL 2 BASIC6.74□□□□□ -1.33
HOXC9P31274 AC025857.2-201ENST00000602711 238 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 AC011453.2-201ENST00000603737 729 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 AP001521.2-201ENST00000608772 546 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 AP003072.5-201ENST00000623872 773 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
HOXC9P31274 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.74□□□□□ -1.33
HOXC9P31274 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.74□□□□□ -1.33
HOXC9P31274 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
HOXC9P31274 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC6.74□□□□□ -1.33
HOXC9P31274 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.74□□□□□ -1.33
HOXC9P31274 SAMMSON-226ENST00000642089 1582 ntBASIC6.74□□□□□ -1.33
HOXC9P31274 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
HOXC9P31274 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.73□□□□□ -1.33
HOXC9P31274 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms