Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 NACAP7-201ENST00000407371 609 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 SLC3A1-203ENST00000409294 792 ntTSL 2 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 BMS1P17-202ENST00000416720 316 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 NME1P1-201ENST00000420914 382 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 HMGB3P24-201ENST00000433260 622 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 OFD1P7Y-201ENST00000454643 1155 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC002075.1-201ENST00000457396 676 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC022215.1-201ENST00000481770 362 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC134050.1-201ENST00000495088 933 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 RN7SL466P-201ENST00000497546 295 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 BTG4P1-201ENST00000510421 183 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC013724.1-201ENST00000511962 783 ntTSL 2 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 SNORA31.13-201ENST00000516624 135 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 SNORA43.3-201ENST00000517240 103 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 MRPS36P5-201ENST00000551909 298 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 OR4U1P-201ENST00000554958 912 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 GARSP1-201ENST00000570895 719 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 RNU6-84P-201ENST00000607737 102 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 PART1_2.1-201ENST00000612397 250 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC138907.10-201ENST00000623708 983 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 BANCR-201ENST00000624238 473 ntTSL 2 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 AC018659.2-201ENST00000624690 715 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 OR11H2-202ENST00000641517 1085 ntBASIC6.09□□□□□ -1.43
TDP1Q9NUW8 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.09□□□□□ -1.43
TDP1Q9NUW8 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
TDP1Q9NUW8 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.09□□□□□ -1.44
TDP1Q9NUW8 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.09□□□□□ -1.44
TDP1Q9NUW8 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
TDP1Q9NUW8 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.09□□□□□ -1.44
TDP1Q9NUW8 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.44
TDP1Q9NUW8 AC034229.2-201ENST00000566945 2508 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 THAP12P9-201ENST00000503971 2360 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 SNORA64.1-201ENST00000362600 132 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 RNU4-40P-201ENST00000364351 143 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 ATP5HP3-201ENST00000396994 486 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 MTCO2P31-201ENST00000402702 684 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AL391361.1-201ENST00000405580 489 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 RN7SKP97-201ENST00000410966 333 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC007568.1-201ENST00000422912 471 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC093084.1-201ENST00000424233 687 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AL022331.1-201ENST00000429025 477 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 SETP8-201ENST00000435341 628 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 GAPDHP48-201ENST00000436626 961 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC023141.8-201ENST00000442554 208 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC073909.1-201ENST00000447112 999 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 NPM1P19-201ENST00000450070 712 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 RPS4XP6-201ENST00000477670 797 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC138866.2-201ENST00000508650 584 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 IGLV3-30-201ENST00000524362 298 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC079064.1-201ENST00000528365 362 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC019131.2-201ENST00000609071 870 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AL445670.1-201ENST00000618889 801 ntBASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC6.08□□□□□ -1.44
TDP1Q9NUW8 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 91.8 ms