Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC026402.1-201ENST00000513642 170 ntBASIC7.22□□□□□ -1.25
MSH6P52701 RN7SKP92-201ENST00000517266 244 ntBASIC7.22□□□□□ -1.25
MSH6P52701 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC7.22□□□□□ -1.25
MSH6P52701 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC7.22□□□□□ -1.25
MSH6P52701 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC7.22□□□□□ -1.25
MSH6P52701 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.22□□□□□ -1.25
MSH6P52701 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC7.22□□□□□ -1.25
MSH6P52701 AC007159.1-201ENST00000566529 4706 ntBASIC7.22□□□□□ -1.25
MSH6P52701 STK3-216ENST00000523601 3107 ntTSL 2 BASIC7.22□□□□□ -1.25
MSH6P52701 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 NEMF-201ENST00000298310 6234 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
MSH6P52701 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC7.22□□□□□ -1.25
MSH6P52701 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC7.22□□□□□ -1.25
MSH6P52701 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
MSH6P52701 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
MSH6P52701 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
MSH6P52701 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC7.21□□□□□ -1.25
MSH6P52701 RNA5SP388-201ENST00000362584 119 ntBASIC7.21□□□□□ -1.25
MSH6P52701 RPL12P43-201ENST00000420608 499 ntBASIC7.21□□□□□ -1.25
MSH6P52701 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC7.21□□□□□ -1.25
MSH6P52701 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC7.21□□□□□ -1.25
MSH6P52701 AC234779.1-201ENST00000425910 285 ntBASIC7.21□□□□□ -1.25
MSH6P52701 TXNP2-201ENST00000443918 295 ntBASIC7.21□□□□□ -1.25
MSH6P52701 SNORA70.11-201ENST00000515987 138 ntBASIC7.21□□□□□ -1.25
MSH6P52701 SNORA70.13-201ENST00000516116 138 ntBASIC7.21□□□□□ -1.25
MSH6P52701 IGHVIII-2-1-201ENST00000518843 291 ntBASIC7.21□□□□□ -1.25
MSH6P52701 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC7.21□□□□□ -1.25
MSH6P52701 AP005131.7-201ENST00000610087 611 ntBASIC7.21□□□□□ -1.25
MSH6P52701 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC7.21□□□□□ -1.25
MSH6P52701 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC7.21□□□□□ -1.25
MSH6P52701 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC7.21□□□□□ -1.25
MSH6P52701 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC7.21□□□□□ -1.25
MSH6P52701 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSH6P52701 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC7.21□□□□□ -1.26
MSH6P52701 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSH6P52701 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSH6P52701 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSH6P52701 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC7.21□□□□□ -1.26
MSH6P52701 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
MSH6P52701 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC7.21□□□□□ -1.26
MSH6P52701 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
MSH6P52701 RNA5SP90-201ENST00000364801 99 ntBASIC7.2□□□□□ -1.26
MSH6P52701 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 SNORD56.6-201ENST00000384569 71 ntBASIC7.2□□□□□ -1.26
MSH6P52701 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC7.2□□□□□ -1.26
MSH6P52701 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 PPIAP21-201ENST00000464473 501 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AC083829.1-201ENST00000503756 657 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC7.2□□□□□ -1.26
MSH6P52701 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 AC010857.1-201ENST00000606398 594 ntBASIC7.2□□□□□ -1.26
MSH6P52701 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 AL022323.4-201ENST00000623980 13120 ntBASIC7.2□□□□□ -1.26
MSH6P52701 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 KARSP3-201ENST00000571212 1504 ntBASIC7.2□□□□□ -1.26
MSH6P52701 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 AC083899.1-201ENST00000454465 3819 ntBASIC7.2□□□□□ -1.26
MSH6P52701 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.2□□□□□ -1.26
MSH6P52701 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 MIR298-201ENST00000401212 88 ntBASIC7.2□□□□□ -1.26
MSH6P52701 SSR1P1-201ENST00000407630 814 ntBASIC7.2□□□□□ -1.26
MSH6P52701 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC7.2□□□□□ -1.26
MSH6P52701 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC7.2□□□□□ -1.26
MSH6P52701 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC7.2□□□□□ -1.26
MSH6P52701 AC093414.1-201ENST00000434712 514 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AC073143.1-201ENST00000436316 395 ntBASIC7.2□□□□□ -1.26
MSH6P52701 EIF2S2P2-201ENST00000447161 982 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AL356390.1-201ENST00000455684 397 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AK3P4-201ENST00000504283 583 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC7.2□□□□□ -1.26
MSH6P52701 ARL6IP1P3-201ENST00000524544 560 ntBASIC7.2□□□□□ -1.26
MSH6P52701 OR11H3P-201ENST00000554547 982 ntBASIC7.2□□□□□ -1.26
MSH6P52701 MIR4715-201ENST00000584117 79 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 AC020915.5-201ENST00000596836 964 ntBASIC7.2□□□□□ -1.26
MSH6P52701 AC105254.2-201ENST00000603636 436 ntBASIC7.2□□□□□ -1.26
MSH6P52701 MLECP1-201ENST00000615893 709 ntBASIC7.2□□□□□ -1.26
MSH6P52701 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC7.2□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms