Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HDDC3Q8N4P3 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 RNA5SP305-201ENST00000362665 119 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 RNA5SP335-201ENST00000363817 110 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 NANOGP9-201ENST00000439890 892 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC245047.2-201ENST00000441060 530 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC105399.1-202ENST00000447303 205 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AL596266.1-201ENST00000448132 400 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC073850.1-201ENST00000449243 255 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 RPS26P41-201ENST00000450370 284 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 OR7L1P-201ENST00000456181 380 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 snoU13.29-201ENST00000459370 104 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC093535.1-203ENST00000512500 730 ntTSL 3 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC005000.1-201ENST00000536192 288 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC126177.5-201ENST00000549599 178 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 BLZF2P-201ENST00000553776 1130 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 H3F3BP2-201ENST00000583907 357 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 TTC39DP-201ENST00000416781 1688 ntBASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.55□□□□□ -1.52
HDDC3Q8N4P3 BCORP1-203ENST00000513194 5093 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AL606537.1-201ENST00000607258 2011 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 RNA5SP326-201ENST00000363209 110 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 MT-RNR1-201ENST00000389680 954 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 RNA5SP105-201ENST00000391123 113 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 CASKP1-201ENST00000412870 582 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 RNF10P1-201ENST00000418589 369 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 FAM96AP1-201ENST00000430879 482 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC105918.1-201ENST00000474399 838 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC022336.1-201ENST00000475510 337 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC109462.1-201ENST00000491087 368 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC090058.1-201ENST00000498788 435 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC137627.1-201ENST00000545761 289 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC018552.1-201ENST00000562099 811 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC117490.2-201ENST00000610042 594 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 Z95327.3-201ENST00000610385 572 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 AC004241.3-201ENST00000611728 517 ntBASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.54□□□□□ -1.52
HDDC3Q8N4P3 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms