Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC122718.1-201ENST00000439448 744 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 FAM133DP-201ENST00000464802 691 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AL020997.2-201ENST00000602607 184 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AC006600.2-201ENST00000624834 2506 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 RNU4-39P-201ENST00000362455 127 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 MIR23B-201ENST00000384832 97 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 RPS26P38-201ENST00000414476 348 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 BMPR1APS2-201ENST00000527904 1012 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 ALB-220ENST00000621628 1606 ntTSL 5 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 AC132825.1-201ENST00000463573 2247 ntBASIC1.63□□□□□ -2.15
SYNE1Q8NF91 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
SYNE1Q8NF91 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 IQCB2P-201ENST00000401788 1633 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 SNURFL-201ENST00000309296 343 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 RN7SKP100-201ENST00000411258 284 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 ATP6V1G1P7-201ENST00000415853 349 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC092651.1-201ENST00000426110 312 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL513327.3-201ENST00000602618 469 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AP003175.1-201ENST00000641383 6658 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 RNA5SP326-201ENST00000363209 110 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 RN7SKP6-201ENST00000364795 319 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 TPT1P12-201ENST00000448968 492 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC063949.1-201ENST00000552900 865 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 BNIP3P11-201ENST00000603878 563 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC007497.1-201ENST00000610421 561 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC091905.4-201ENST00000623432 202 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 EPGN-201ENST00000332112 847 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 SNORA70H-201ENST00000383910 135 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 SNORA70J-201ENST00000384182 135 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 RPS27P18-201ENST00000431701 247 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 NANOGP9-201ENST00000439890 892 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 snoU13.20-201ENST00000459180 104 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL627230.1-201ENST00000613077 211 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL591926.8-201ENST00000616876 211 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 WBP1LP8-201ENST00000617401 327 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AP001284.1-201ENST00000528393 2118 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 DBIP1-201ENST00000401435 260 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC005033.1-201ENST00000428904 813 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AC091180.1-201ENST00000462104 372 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 RN7SL354P-201ENST00000469282 294 ntBASIC1.62□□□□□ -2.15
SYNE1Q8NF91 AL161747.1-201ENST00000480068 358 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms