Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.62□□□□□ -1.35
COL18A1P39060 AC004975.1-201ENST00000428733 208 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC090018.1-201ENST00000434369 367 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AL691482.1-201ENST00000453255 87 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 HMGB1P4-201ENST00000455362 567 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 AC116562.1-201ENST00000485355 781 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.62□□□□□ -1.35
COL18A1P39060 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.62□□□□□ -1.35
COL18A1P39060 MIR4675-201ENST00000577898 77 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 RPL26P30-202ENST00000602923 645 ntBASIC6.62□□□□□ -1.35
COL18A1P39060 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.62□□□□□ -1.35
COL18A1P39060 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
COL18A1P39060 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC6.61□□□□□ -1.35
COL18A1P39060 FAM186A-201ENST00000327337 7127 ntAPPRIS P2 TSL 5 BASIC6.61□□□□□ -1.35
COL18A1P39060 ALB-214ENST00000509063 1911 ntTSL 5 BASIC6.61□□□□□ -1.35
COL18A1P39060 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
COL18A1P39060 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.61□□□□□ -1.35
COL18A1P39060 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.61□□□□□ -1.35
COL18A1P39060 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.61□□□□□ -1.35
COL18A1P39060 GTF2IP2-201ENST00000424290 697 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 AC012519.1-201ENST00000424588 610 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 TXNP2-201ENST00000443918 295 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 EIF2S2P2-201ENST00000447161 982 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 OR1H1P-201ENST00000448731 937 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 snoU13.1-201ENST00000459157 104 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 OR11I1P-201ENST00000486033 954 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 RNU2-30P-201ENST00000516209 141 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
COL18A1P39060 RNF138P2-201ENST00000603490 592 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 AL445423.1-201ENST00000609941 536 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 AL392048.1-201ENST00000613946 534 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.61□□□□□ -1.35
COL18A1P39060 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 SLC4A8-203ENST00000453097 11824 ntAPPRIS P3 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
COL18A1P39060 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
COL18A1P39060 ECM1P2-201ENST00000503354 1577 ntBASIC6.61□□□□□ -1.35
COL18A1P39060 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.6□□□□□ -1.35
COL18A1P39060 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.6□□□□□ -1.35
COL18A1P39060 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
COL18A1P39060 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC6.6□□□□□ -1.35
COL18A1P39060 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 SNORD113.2-201ENST00000364166 89 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 MIR129-1-201ENST00000384972 72 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 U3.22-201ENST00000391120 215 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.6□□□□□ -1.35
COL18A1P39060 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.6□□□□□ -1.35
COL18A1P39060 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.6□□□□□ -1.35
COL18A1P39060 RPL19P16-201ENST00000433839 588 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 OR2A3P-201ENST00000493774 953 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 AC009643.1-201ENST00000532030 391 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 MIR7853-201ENST00000584820 132 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC6.6□□□□□ -1.35
COL18A1P39060 AC103792.1-201ENST00000603591 919 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 MIR6853-201ENST00000619642 74 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 AC019206.1-201ENST00000621938 425 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 AC021106.3-201ENST00000623925 531 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.6□□□□□ -1.35
COL18A1P39060 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
COL18A1P39060 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 CCT8P1-201ENST00000413611 1657 ntBASIC6.6□□□□□ -1.35
COL18A1P39060 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 GON4L-217ENST00000615926 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
COL18A1P39060 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
COL18A1P39060 ZNF445-202ENST00000425708 10052 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL18A1P39060 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL18A1P39060 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
COL18A1P39060 RPL7AP49-201ENST00000429522 581 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AL591438.1-201ENST00000433508 581 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.59□□□□□ -1.35
COL18A1P39060 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.59□□□□□ -1.35
COL18A1P39060 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC6.59□□□□□ -1.35
COL18A1P39060 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.59□□□□□ -1.35
COL18A1P39060 AC083829.1-201ENST00000503756 657 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.59□□□□□ -1.35
COL18A1P39060 MIR3160-1-201ENST00000577972 85 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC6.59□□□□□ -1.35
COL18A1P39060 MIR4715-201ENST00000584117 79 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AL590392.1-201ENST00000604960 446 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 AC010857.1-201ENST00000606398 594 ntBASIC6.59□□□□□ -1.35
COL18A1P39060 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL18A1P39060 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC6.59□□□□□ -1.35
COL18A1P39060 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
COL18A1P39060 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.59□□□□□ -1.35
COL18A1P39060 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms