Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 TAF9P2-201ENST00000454958 515 ntBASIC5.89□□□□□ -1.47
MSX2P35548 ANKRD26P4-201ENST00000455755 950 ntBASIC5.89□□□□□ -1.47
MSX2P35548 UCK2-205ENST00000469256 753 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 RN7SL868P-201ENST00000485915 303 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 MRPL57P6-201ENST00000506570 309 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 AC008837.1-201ENST00000511513 412 ntBASIC5.89□□□□□ -1.47
MSX2P35548 LINC01618-201ENST00000514957 727 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 RNA5SP318-201ENST00000516352 92 ntBASIC5.89□□□□□ -1.47
MSX2P35548 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 H2AFV-208ENST00000521529 439 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.89□□□□□ -1.47
MSX2P35548 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 AP001804.2-201ENST00000533932 910 ntBASIC5.89□□□□□ -1.47
MSX2P35548 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 AC023310.2-201ENST00000553844 547 ntBASIC5.89□□□□□ -1.47
MSX2P35548 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 HNRNPA1P74-201ENST00000560782 835 ntBASIC5.89□□□□□ -1.47
MSX2P35548 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC5.89□□□□□ -1.47
MSX2P35548 GARSP1-201ENST00000570895 719 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC5.89□□□□□ -1.47
MSX2P35548 AL512430.4-201ENST00000603085 613 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 AC073534.2-201ENST00000620377 381 ntBASIC5.89□□□□□ -1.47
MSX2P35548 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.89□□□□□ -1.47
MSX2P35548 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
MSX2P35548 AC025470.1-201ENST00000510053 2032 ntBASIC5.89□□□□□ -1.47
MSX2P35548 ATP13A4-204ENST00000400270 1458 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 AL161756.3-201ENST00000641216 2071 ntBASIC5.89□□□□□ -1.47
MSX2P35548 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
MSX2P35548 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.89□□□□□ -1.47
MSX2P35548 KARSP3-201ENST00000571212 1504 ntBASIC5.89□□□□□ -1.47
MSX2P35548 AC007878.1-201ENST00000434786 1615 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 AC245100.2-201ENST00000454544 1679 ntBASIC5.88□□□□□ -1.47
MSX2P35548 C17orf78-203ENST00000611038 1675 ntAPPRIS ALT2 TSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 DNM1P47-203ENST00000571780 12667 ntBASIC5.88□□□□□ -1.47
MSX2P35548 N4BP2L1-209ENST00000530622 1897 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 LINC00698-203ENST00000468072 1957 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 UBE2Q2P1-202ENST00000354771 883 ntBASIC5.88□□□□□ -1.47
MSX2P35548 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
MSX2P35548 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 RNA5SP140-201ENST00000364524 92 ntBASIC5.88□□□□□ -1.47
MSX2P35548 RNU6-304P-201ENST00000364855 107 ntBASIC5.88□□□□□ -1.47
MSX2P35548 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 NQO1-202ENST00000379046 1105 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
MSX2P35548 Y_RNA.578-201ENST00000390903 88 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC245036.1-201ENST00000391727 309 ntBASIC5.88□□□□□ -1.47
MSX2P35548 MCTS2P-201ENST00000394552 546 ntBASIC5.88□□□□□ -1.47
MSX2P35548 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AL139135.1-201ENST00000412675 209 ntBASIC5.88□□□□□ -1.47
MSX2P35548 UBE2V1P10-201ENST00000414685 269 ntBASIC5.88□□□□□ -1.47
MSX2P35548 MTCO3P41-201ENST00000414801 328 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 OSBPL10-AS1-202ENST00000418728 458 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 ZDHHC20P2-201ENST00000424108 429 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 AL589935.1-218ENST00000434683 529 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 ELOCP8-201ENST00000439309 332 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AL450003.1-201ENST00000439447 455 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 AL031667.1-201ENST00000440222 725 ntBASIC5.88□□□□□ -1.47
MSX2P35548 ELOCP15-201ENST00000442090 332 ntBASIC5.88□□□□□ -1.47
MSX2P35548 HGF-206ENST00000444829 1184 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
MSX2P35548 HMGB3P6-201ENST00000444896 598 ntBASIC5.88□□□□□ -1.47
MSX2P35548 LIX1L-AS1-206ENST00000447686 846 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC5.88□□□□□ -1.47
MSX2P35548 AL445238.1-201ENST00000450029 712 ntTSL 2 BASIC5.88□□□□□ -1.47
MSX2P35548 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC5.88□□□□□ -1.47
MSX2P35548 NDUFAF4P4-201ENST00000454883 502 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC104689.1-201ENST00000473356 768 ntBASIC5.88□□□□□ -1.47
MSX2P35548 AC025271.1-201ENST00000485045 429 ntBASIC5.88□□□□□ -1.47
MSX2P35548 PPP1R11P1-201ENST00000486095 376 ntBASIC5.88□□□□□ -1.47
MSX2P35548 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms