Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC19.89■□□□□ 0.77
Scn11aQ9R053 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC19.89■□□□□ 0.77
Scn11aQ9R053 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC19.89■□□□□ 0.77
Scn11aQ9R053 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Scn11aQ9R053 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Gm15165-201ENSMUST00000118140 502 ntBASIC19.88■□□□□ 0.77
Scn11aQ9R053 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Rps27l-203ENSMUST00000127896 575 ntTSL 5 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Scn11aQ9R053 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Rbm11-201ENSMUST00000046378 1400 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Gm9449-201ENSMUST00000207265 1011 ntBASIC19.87■□□□□ 0.77
Scn11aQ9R053 Timm13-203ENSMUST00000218481 471 ntTSL 3 BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Scn11aQ9R053 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Gm8349-201ENSMUST00000182720 1003 ntBASIC19.86■□□□□ 0.77
Scn11aQ9R053 Gm20324-201ENSMUST00000186291 1118 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.86■□□□□ 0.77
Scn11aQ9R053 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC19.86■□□□□ 0.77
Scn11aQ9R053 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Scn11aQ9R053 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Gm18195-201ENSMUST00000207604 706 ntBASIC19.85■□□□□ 0.77
Scn11aQ9R053 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC19.85■□□□□ 0.77
Scn11aQ9R053 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC19.85■□□□□ 0.77
Scn11aQ9R053 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Scn11aQ9R053 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Slc46a1-201ENSMUST00000001126 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Scn11aQ9R053 AC161829.1-201ENSMUST00000220298 281 ntBASIC19.84■□□□□ 0.77
Scn11aQ9R053 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms