Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Il3ra-202ENSMUST00000223589 738 ntBASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Sgta-201ENSMUST00000005067 1969 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Gm26917-202ENSMUST00000192833 3329 ntBASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC16.12■□□□□ 0.17
Lsm1Q8VC85 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lsm1Q8VC85 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 A330074K22Rik-201ENSMUST00000183235 2489 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 AU022751-202ENSMUST00000117544 2201 ntAPPRIS P4 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 AC120002.2-201ENSMUST00000220205 773 ntBASIC16.1■□□□□ 0.17
Lsm1Q8VC85 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lsm1Q8VC85 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Gm20760-201ENSMUST00000179197 648 ntBASIC16.09■□□□□ 0.17
Lsm1Q8VC85 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Gna12-201ENSMUST00000000153 3416 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lsm1Q8VC85 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Lsm1Q8VC85 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Lsm1Q8VC85 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Lsm1Q8VC85 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lsm1Q8VC85 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Lsm1Q8VC85 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC16.08■□□□□ 0.16
Lsm1Q8VC85 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC16.08■□□□□ 0.16
Lsm1Q8VC85 Mir1199-201ENSMUST00000117015 119 ntBASIC16.08■□□□□ 0.16
Lsm1Q8VC85 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 26.7 ms