Protein–RNA interactions for Protein: Q08943

Ssrp1, FACT complex subunit SSRP1, mousemouse

Known RBP Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ssrp1Q08943 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Gm5414-201ENSMUST00000062879 1659 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ssrp1Q08943 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Mir5122-201ENSMUST00000175004 89 ntBASIC18.68■□□□□ 0.58
Ssrp1Q08943 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.68■□□□□ 0.58
Ssrp1Q08943 Gm21814-202ENSMUST00000203277 873 ntBASIC18.68■□□□□ 0.58
Ssrp1Q08943 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
Ssrp1Q08943 AC107711.5-202ENSMUST00000226429 702 ntBASIC18.68■□□□□ 0.58
Ssrp1Q08943 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ssrp1Q08943 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Gm18958-201ENSMUST00000174258 762 ntBASIC18.67■□□□□ 0.58
Ssrp1Q08943 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
Ssrp1Q08943 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Gm13216-201ENSMUST00000117145 591 ntBASIC18.66■□□□□ 0.58
Ssrp1Q08943 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC18.66■□□□□ 0.58
Ssrp1Q08943 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Gm8839-201ENSMUST00000121279 1645 ntBASIC18.66■□□□□ 0.58
Ssrp1Q08943 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ssrp1Q08943 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Gm5297-201ENSMUST00000198555 1171 ntBASIC18.65■□□□□ 0.58
Ssrp1Q08943 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Gm36858-201ENSMUST00000194501 2391 ntBASIC18.65■□□□□ 0.58
Ssrp1Q08943 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC18.65■□□□□ 0.58
Ssrp1Q08943 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Ssrp1Q08943 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.64■□□□□ 0.58
Ssrp1Q08943 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ssrp1Q08943 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Ssrp1Q08943 Large2-215ENSMUST00000176810 2477 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
Ssrp1Q08943 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Lrrc36-206ENSMUST00000216765 2301 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Ssrp1Q08943 Gm43548-201ENSMUST00000197139 2353 ntBASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms