Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL7A1Q02388 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC14.09□□□□□ -0.15
COL7A1Q02388 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC14.09□□□□□ -0.15
COL7A1Q02388 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.09□□□□□ -0.15
COL7A1Q02388 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
COL7A1Q02388 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC14.09□□□□□ -0.15
COL7A1Q02388 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
COL7A1Q02388 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC14.09□□□□□ -0.15
COL7A1Q02388 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC14.09□□□□□ -0.15
COL7A1Q02388 MYB-221ENST00000527615 2381 ntTSL 5 BASIC14.08□□□□□ -0.15
COL7A1Q02388 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
COL7A1Q02388 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC14.08□□□□□ -0.15
COL7A1Q02388 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC14.08□□□□□ -0.15
COL7A1Q02388 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.08□□□□□ -0.15
COL7A1Q02388 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL7A1Q02388 KRT8P41-201ENST00000533985 1514 ntBASIC14.08□□□□□ -0.16
COL7A1Q02388 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL7A1Q02388 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC14.08□□□□□ -0.16
COL7A1Q02388 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
COL7A1Q02388 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
COL7A1Q02388 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC14.08□□□□□ -0.16
COL7A1Q02388 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC14.08□□□□□ -0.16
COL7A1Q02388 AC140113.3-201ENST00000605663 199 ntBASIC14.08□□□□□ -0.16
COL7A1Q02388 AL031432.5-201ENST00000641059 760 ntBASIC14.08□□□□□ -0.16
COL7A1Q02388 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC14.08□□□□□ -0.16
COL7A1Q02388 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC14.08□□□□□ -0.16
COL7A1Q02388 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.08□□□□□ -0.16
COL7A1Q02388 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC14.08□□□□□ -0.16
COL7A1Q02388 ZNF444P1-201ENST00000559497 298 ntBASIC14.08□□□□□ -0.16
COL7A1Q02388 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
COL7A1Q02388 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC14.07□□□□□ -0.16
COL7A1Q02388 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 STARP1-201ENST00000397973 869 ntBASIC14.07□□□□□ -0.16
COL7A1Q02388 SPDYE15P-201ENST00000424157 909 ntBASIC14.07□□□□□ -0.16
COL7A1Q02388 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.07□□□□□ -0.16
COL7A1Q02388 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC14.07□□□□□ -0.16
COL7A1Q02388 AL353719.1-201ENST00000566847 864 ntBASIC14.07□□□□□ -0.16
COL7A1Q02388 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC14.07□□□□□ -0.16
COL7A1Q02388 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC14.07□□□□□ -0.16
COL7A1Q02388 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC14.07□□□□□ -0.16
COL7A1Q02388 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
COL7A1Q02388 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.07□□□□□ -0.16
COL7A1Q02388 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.07□□□□□ -0.16
COL7A1Q02388 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.07□□□□□ -0.16
COL7A1Q02388 IFNL4P1-201ENST00000607083 540 ntBASIC14.07□□□□□ -0.16
COL7A1Q02388 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
COL7A1Q02388 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC14.07□□□□□ -0.16
COL7A1Q02388 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 HBZP1-201ENST00000354915 429 ntBASIC14.06□□□□□ -0.16
COL7A1Q02388 HLA-G-202ENST00000376815 851 ntBASIC14.06□□□□□ -0.16
COL7A1Q02388 HLA-G-203ENST00000376818 1127 ntBASIC14.06□□□□□ -0.16
COL7A1Q02388 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.06□□□□□ -0.16
COL7A1Q02388 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC14.06□□□□□ -0.16
COL7A1Q02388 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC14.06□□□□□ -0.16
COL7A1Q02388 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC14.06□□□□□ -0.16
COL7A1Q02388 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.06□□□□□ -0.16
COL7A1Q02388 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
COL7A1Q02388 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
COL7A1Q02388 KRT8P17-201ENST00000453110 1448 ntBASIC14.06□□□□□ -0.16
COL7A1Q02388 GUSBP5-202ENST00000510805 1989 ntBASIC14.06□□□□□ -0.16
COL7A1Q02388 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
COL7A1Q02388 CD37-204ENST00000535669 1674 ntTSL 2 BASIC14.06□□□□□ -0.16
COL7A1Q02388 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms