Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Msh3P13705 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC18.48■□□□□ 0.55
Msh3P13705 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Msh3P13705 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.48■□□□□ 0.55
Msh3P13705 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC18.48■□□□□ 0.55
Msh3P13705 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Msh3P13705 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
Msh3P13705 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Msh3P13705 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Msh3P13705 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Msh3P13705 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Msh3P13705 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Msh3P13705 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.47■□□□□ 0.55
Msh3P13705 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.47■□□□□ 0.55
Msh3P13705 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
Msh3P13705 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Zfp264-201ENSMUST00000208656 1563 ntBASIC18.47■□□□□ 0.55
Msh3P13705 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Msh3P13705 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.46■□□□□ 0.55
Msh3P13705 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC18.46■□□□□ 0.55
Msh3P13705 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
Msh3P13705 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.46■□□□□ 0.55
Msh3P13705 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Msh3P13705 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
Msh3P13705 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Msh3P13705 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
Msh3P13705 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.45■□□□□ 0.54
Msh3P13705 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC18.45■□□□□ 0.54
Msh3P13705 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.45■□□□□ 0.54
Msh3P13705 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC18.45■□□□□ 0.54
Msh3P13705 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.45■□□□□ 0.54
Msh3P13705 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 Tmem35b-201ENSMUST00000094712 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
Msh3P13705 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Msh3P13705 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
Msh3P13705 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
Msh3P13705 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC18.44■□□□□ 0.54
Msh3P13705 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Msh3P13705 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms