Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
VPS39Q96JC1 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR52B3P-201ENST00000314715 928 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 SNORA48.4-201ENST00000391089 134 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AL356317.1-201ENST00000396110 1436 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 VDAC2P1-201ENST00000399358 958 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR2AT2P-201ENST00000413438 905 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 PMCHL1-203ENST00000423301 697 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AKR1B10P1-201ENST00000425765 942 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 RPL7AP49-201ENST00000429522 581 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AL591438.1-201ENST00000433508 581 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC094085.1-201ENST00000468914 584 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR8G3P-201ENST00000533406 921 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AP002373.2-201ENST00000541631 1060 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 MRPS21P7-201ENST00000566937 238 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 RBM22P12-201ENST00000567098 1255 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC019322.1-201ENST00000571869 389 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC026367.3-201ENST00000619032 590 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AP003499.2-201ENST00000624100 483 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 NXF4-202ENST00000416098 1465 ntBASIC5.44□□□□□ -1.54
VPS39Q96JC1 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS39Q96JC1 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS39Q96JC1 OR10AB1P-202ENST00000641219 1686 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC114786.1-201ENST00000512892 1415 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 RNA5SP187-201ENST00000384400 119 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 MTND4LP13-201ENST00000425022 298 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AL121578.1-201ENST00000428051 892 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 RPL12P17-201ENST00000432393 498 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 RAB28P3-201ENST00000448325 597 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC090804.1-201ENST00000448870 490 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 NDUFA5P5-201ENST00000468361 342 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS39Q96JC1 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC109481.1-201ENST00000509173 282 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC109464.1-201ENST00000511091 819 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 SNORA43.3-201ENST00000517240 103 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC092709.1-201ENST00000521355 1045 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 NANOGNBP2-201ENST00000544753 553 ntBASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS39Q96JC1 NMNAT1P5-201ENST00000559657 841 ntBASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms