Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC6.76□□□□□ -1.33
COL6A1P12109 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 PPP1R11-201ENST00000376758 1723 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC6.76□□□□□ -1.33
COL6A1P12109 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 NRXN1-248ENST00000636345 3595 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.75□□□□□ -1.33
COL6A1P12109 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
COL6A1P12109 GAPDHP24-201ENST00000328713 983 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 RN7SKP128-201ENST00000364270 303 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 RN7SKP124-201ENST00000364730 341 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 Y_RNA.318-201ENST00000365131 97 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 HMGB1P13-201ENST00000406019 642 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.75□□□□□ -1.33
COL6A1P12109 AP000534.2-201ENST00000412729 568 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC6.75□□□□□ -1.33
COL6A1P12109 RPL22P18-201ENST00000417197 377 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 AL606495.1-201ENST00000422100 813 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC6.75□□□□□ -1.33
COL6A1P12109 AL662874.1-201ENST00000426065 230 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 USP9YP24-201ENST00000434374 697 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 MTCO1P53-201ENST00000441633 699 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 VN1R25P-201ENST00000443385 738 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 TXNP2-201ENST00000443918 295 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 USP9YP17-201ENST00000444617 696 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC6.75□□□□□ -1.33
COL6A1P12109 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.75□□□□□ -1.33
COL6A1P12109 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC6.75□□□□□ -1.33
COL6A1P12109 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC6.75□□□□□ -1.33
COL6A1P12109 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 NENFP3-201ENST00000503735 313 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.75□□□□□ -1.33
COL6A1P12109 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.75□□□□□ -1.33
COL6A1P12109 HMGB1P47-201ENST00000511281 589 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC010476.1-201ENST00000519111 851 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.75□□□□□ -1.33
COL6A1P12109 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.75□□□□□ -1.33
COL6A1P12109 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 MIMT1-201ENST00000597105 1050 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC6.75□□□□□ -1.33
COL6A1P12109 AC119751.7-201ENST00000600494 245 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AL022067.1-201ENST00000602426 454 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AL358072.1-201ENST00000604156 575 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC004775.1-201ENST00000607389 753 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 AL096803.3-201ENST00000609032 532 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC011939.3-201ENST00000613686 466 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 MIR1264-201ENST00000616374 69 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC008115.4-201ENST00000619780 775 ntBASIC6.75□□□□□ -1.33
COL6A1P12109 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 BPESC1-201ENST00000418282 3522 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
COL6A1P12109 FOXP1-212ENST00000491238 2250 ntTSL 2 BASIC6.75□□□□□ -1.33
COL6A1P12109 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC6.75□□□□□ -1.33
COL6A1P12109 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL6A1P12109 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.75□□□□□ -1.33
COL6A1P12109 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.75□□□□□ -1.33
COL6A1P12109 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 MTND4P5-201ENST00000435821 1374 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC107021.2-201ENST00000567714 2095 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 RNU4-28P-201ENST00000364739 141 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 SNORA43.1-201ENST00000364863 140 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 MIR640-201ENST00000385086 96 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 MIR1286-201ENST00000408112 78 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 RN7SKP182-201ENST00000410772 298 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 OR2AT2P-201ENST00000413438 905 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC6.74□□□□□ -1.33
COL6A1P12109 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL6A1P12109 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC6.74□□□□□ -1.33
COL6A1P12109 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC6.74□□□□□ -1.33
COL6A1P12109 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6.74□□□□□ -1.33
COL6A1P12109 H2AFZP6-201ENST00000444403 394 ntBASIC6.74□□□□□ -1.33
COL6A1P12109 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms