Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDCBPO00560 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SDCBPO00560 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SDCBPO00560 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.47□□□□□ -1.69
SDCBPO00560 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
SDCBPO00560 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.69
SDCBPO00560 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC4.46□□□□□ -1.69
SDCBPO00560 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.46□□□□□ -1.69
SDCBPO00560 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.46□□□□□ -1.69
SDCBPO00560 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.69
SDCBPO00560 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.69
SDCBPO00560 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 RNA5SP319-201ENST00000362768 119 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 GSTM5P1-201ENST00000434751 660 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC073109.1-201ENST00000445066 978 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 AC012512.1-201ENST00000446594 718 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 RPL31P15-201ENST00000449770 338 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.46□□□□□ -1.7
SDCBPO00560 YWHAEP1-201ENST00000453697 763 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC108161.1-201ENST00000461060 402 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 B4GALNT2P1-201ENST00000508857 307 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC022360.1-201ENST00000521058 340 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC4.46□□□□□ -1.7
SDCBPO00560 AP004607.2-201ENST00000533949 322 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC4.46□□□□□ -1.7
SDCBPO00560 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC078878.1-201ENST00000539832 958 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC016839.1-201ENST00000578162 867 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 AP000542.2-201ENST00000623199 6179 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.46□□□□□ -1.7
SDCBPO00560 AC093849.1-201ENST00000563631 2209 ntBASIC4.46□□□□□ -1.7
SDCBPO00560 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
SDCBPO00560 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.46□□□□□ -1.7
SDCBPO00560 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
SDCBPO00560 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.45□□□□□ -1.7
SDCBPO00560 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.45□□□□□ -1.7
SDCBPO00560 RN7SKP153-201ENST00000365026 316 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
SDCBPO00560 RN7SKP286-201ENST00000410894 299 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.45□□□□□ -1.7
SDCBPO00560 MTND6P12-201ENST00000428247 522 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 CYCSP24-201ENST00000445119 316 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 HMGN1P36-201ENST00000446623 298 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 NOP56P2-201ENST00000447491 769 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.45□□□□□ -1.7
SDCBPO00560 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 RN7SL814P-201ENST00000487715 300 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.45□□□□□ -1.7
SDCBPO00560 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.45□□□□□ -1.7
SDCBPO00560 AC027544.3-201ENST00000535082 757 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 AC015720.2-201ENST00000567709 334 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 AC005341.1-201ENST00000571086 708 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 RN7SL356P-201ENST00000582228 248 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 AC060766.1-201ENST00000590824 627 ntBASIC4.45□□□□□ -1.7
SDCBPO00560 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC4.45□□□□□ -1.7
SDCBPO00560 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC4.45□□□□□ -1.7
SDCBPO00560 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.45□□□□□ -1.7
SDCBPO00560 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SDCBPO00560 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.45□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 88.7 ms