Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 DHFRP1-201ENST00000579682 559 ntBASIC5.16□□□□□ -1.58
SOX3P41225 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.16□□□□□ -1.58
SOX3P41225 AC022387.2-201ENST00000604050 448 ntBASIC5.16□□□□□ -1.58
SOX3P41225 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.16□□□□□ -1.58
SOX3P41225 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 AC079395.2-201ENST00000610982 737 ntBASIC5.16□□□□□ -1.58
SOX3P41225 AC021766.1-201ENST00000624404 741 ntBASIC5.16□□□□□ -1.58
SOX3P41225 AP000550.3-201ENST00000637734 379 ntBASIC5.16□□□□□ -1.58
SOX3P41225 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 DDX4-211ENST00000511853 1984 ntTSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
SOX3P41225 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
SOX3P41225 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
SOX3P41225 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SOX3P41225 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SOX3P41225 AC090220.1-201ENST00000593078 1699 ntBASIC5.15□□□□□ -1.58
SOX3P41225 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.15□□□□□ -1.58
SOX3P41225 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
SOX3P41225 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.15□□□□□ -1.58
SOX3P41225 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
SOX3P41225 RN7SKP160-201ENST00000363804 340 ntBASIC5.15□□□□□ -1.59
SOX3P41225 RNU6-819P-201ENST00000364116 107 ntBASIC5.15□□□□□ -1.59
SOX3P41225 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.15□□□□□ -1.59
SOX3P41225 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.15□□□□□ -1.59
SOX3P41225 U3.28-201ENST00000391249 210 ntBASIC5.15□□□□□ -1.59
SOX3P41225 PEX12P1-201ENST00000400284 1048 ntBASIC5.15□□□□□ -1.59
SOX3P41225 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX3P41225 HYALP1-201ENST00000417674 1279 ntBASIC5.15□□□□□ -1.59
SOX3P41225 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SOX3P41225 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.15□□□□□ -1.59
SOX3P41225 TMEM183AP1-205ENST00000432739 290 ntBASIC5.15□□□□□ -1.59
SOX3P41225 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AC019185.1-201ENST00000442718 389 ntBASIC5.15□□□□□ -1.59
SOX3P41225 RANP1-206ENST00000455094 651 ntBASIC5.15□□□□□ -1.59
SOX3P41225 RPL35AP19-201ENST00000469425 329 ntBASIC5.15□□□□□ -1.59
SOX3P41225 RN7SL184P-201ENST00000488308 297 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.15□□□□□ -1.59
SOX3P41225 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.15□□□□□ -1.59
SOX3P41225 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
SOX3P41225 GTF2IP11-201ENST00000526931 420 ntBASIC5.15□□□□□ -1.59
SOX3P41225 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.15□□□□□ -1.59
SOX3P41225 AL359219.2-201ENST00000555184 348 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX3P41225 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX3P41225 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.15□□□□□ -1.59
SOX3P41225 AC015720.2-201ENST00000567709 334 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AC010547.7-201ENST00000570323 333 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX3P41225 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX3P41225 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.15□□□□□ -1.59
SOX3P41225 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX3P41225 AC020915.5-201ENST00000596836 964 ntBASIC5.15□□□□□ -1.59
SOX3P41225 VN1R81P-201ENST00000602085 372 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.15□□□□□ -1.59
SOX3P41225 AC010632.3-201ENST00000611377 369 ntBASIC5.15□□□□□ -1.59
SOX3P41225 AC025574.2-201ENST00000615621 514 ntBASIC5.15□□□□□ -1.59
SOX3P41225 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SOX3P41225 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SOX3P41225 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
SOX3P41225 CASC19-248ENST00000641674 1356 ntBASIC5.15□□□□□ -1.59
SOX3P41225 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.15□□□□□ -1.59
SOX3P41225 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
SOX3P41225 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
SOX3P41225 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.14□□□□□ -1.59
SOX3P41225 RNA5SP326-201ENST00000363209 110 ntBASIC5.14□□□□□ -1.59
SOX3P41225 RNU4-2-201ENST00000365668 141 ntBASIC5.14□□□□□ -1.59
SOX3P41225 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SOX3P41225 AL391361.1-201ENST00000405580 489 ntBASIC5.14□□□□□ -1.59
SOX3P41225 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.14□□□□□ -1.59
SOX3P41225 AC096921.1-201ENST00000411661 375 ntBASIC5.14□□□□□ -1.59
SOX3P41225 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.14□□□□□ -1.59
SOX3P41225 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms