Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MSH3P20585 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 PEX12P1-201ENST00000400284 1048 ntBASIC5.54□□□□□ -1.52
MSH3P20585 OR6E1P-201ENST00000414424 923 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.54□□□□□ -1.52
MSH3P20585 FMO7P-201ENST00000436045 768 ntBASIC5.54□□□□□ -1.52
MSH3P20585 MTND2P40-201ENST00000436718 841 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.54□□□□□ -1.52
MSH3P20585 RPS17P5-201ENST00000498293 408 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.54□□□□□ -1.52
MSH3P20585 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
MSH3P20585 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.54□□□□□ -1.52
MSH3P20585 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AC073575.2-201ENST00000614212 627 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AL109620.1-201ENST00000618738 1197 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AL691477.1-201ENST00000624398 162 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AP000720.1-201ENST00000625091 483 ntBASIC5.54□□□□□ -1.52
MSH3P20585 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
MSH3P20585 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.54□□□□□ -1.52
MSH3P20585 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
MSH3P20585 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
MSH3P20585 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC5.54□□□□□ -1.52
MSH3P20585 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 HSPD1P7-201ENST00000447985 1686 ntBASIC5.53□□□□□ -1.52
MSH3P20585 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH3P20585 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.53□□□□□ -1.52
MSH3P20585 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
MSH3P20585 ADAM24P-201ENST00000398655 2101 ntBASIC5.53□□□□□ -1.52
MSH3P20585 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH3P20585 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.53□□□□□ -1.52
MSH3P20585 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.53□□□□□ -1.52
MSH3P20585 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.53□□□□□ -1.52
MSH3P20585 RNU6-891P-201ENST00000384280 111 ntBASIC5.53□□□□□ -1.52
MSH3P20585 MIR551A-201ENST00000385042 96 ntBASIC5.53□□□□□ -1.52
MSH3P20585 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.53□□□□□ -1.52
MSH3P20585 LINC02210-201ENST00000444561 288 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AL596266.1-201ENST00000448132 400 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC5.53□□□□□ -1.52
MSH3P20585 HMGN1P8-201ENST00000463578 288 ntBASIC5.53□□□□□ -1.52
MSH3P20585 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
MSH3P20585 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.53□□□□□ -1.52
MSH3P20585 IGLVIV-64-201ENST00000518581 301 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.53□□□□□ -1.52
MSH3P20585 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.53□□□□□ -1.52
MSH3P20585 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.53□□□□□ -1.52
MSH3P20585 OR4A43P-201ENST00000532938 908 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC027544.3-201ENST00000535082 757 ntBASIC5.53□□□□□ -1.52
MSH3P20585 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.53□□□□□ -1.52
MSH3P20585 AC022404.1-201ENST00000555320 273 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 TMF1P1-201ENST00000576058 373 ntBASIC5.53□□□□□ -1.52
MSH3P20585 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 FO393422.1-201ENST00000603908 708 ntBASIC5.53□□□□□ -1.52
MSH3P20585 PPATP2-201ENST00000605635 508 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AL022394.1-201ENST00000606979 292 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC007786.3-201ENST00000615154 596 ntBASIC5.53□□□□□ -1.52
MSH3P20585 CU639417.4-201ENST00000623928 207 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC020923.1-201ENST00000624021 917 ntBASIC5.53□□□□□ -1.52
MSH3P20585 AC008691.1-209ENST00000642094 814 ntBASIC5.53□□□□□ -1.52
MSH3P20585 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
MSH3P20585 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
MSH3P20585 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
MSH3P20585 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 AC092681.1-201ENST00000297369 291 ntBASIC5.52□□□□□ -1.53
MSH3P20585 MIR323A-201ENST00000362199 86 ntBASIC5.52□□□□□ -1.53
MSH3P20585 RNA5SP435-201ENST00000364044 108 ntBASIC5.52□□□□□ -1.53
MSH3P20585 RNU4-2-201ENST00000365668 141 ntBASIC5.52□□□□□ -1.53
MSH3P20585 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 AL596448.1-201ENST00000415024 392 ntBASIC5.52□□□□□ -1.53
MSH3P20585 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 121.9 ms