Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC008040.1-202ENST00000483289 6251 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC092747.4-201ENST00000620519 1861 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 LUC7L2-201ENST00000263545 2287 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AL158152.1-201ENST00000602652 1435 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 DDX39BP1-205ENST00000422507 192 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 SNORD125-201ENST00000459538 96 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC091153.1-201ENST00000466297 402 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 ATP5LP5-201ENST00000483050 299 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC020937.1-201ENST00000519677 1013 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 C1GALT1P3-201ENST00000522049 819 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 MIR5096-201ENST00000583713 70 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AP001357.1-201ENST00000586304 1053 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 SNX18P3-202ENST00000565670 1750 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 NLRP3P1-201ENST00000622303 1785 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 CHMP1B2P-201ENST00000399581 597 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 AC026402.1-201ENST00000513642 170 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 AC092490.3-201ENST00000545370 572 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 RN7SL356P-201ENST00000582228 248 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 H3F3BP2-201ENST00000583907 357 ntBASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
CCDC88AQ3V6T2 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 GLULP6-201ENST00000399502 913 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC069213.2-201ENST00000420238 366 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 RIMKLBP2-201ENST00000424737 654 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 RPL34P27-201ENST00000428810 349 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 CNOT7P1-201ENST00000429006 852 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 ZDHHC20P1-204ENST00000435787 423 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AL590399.4-201ENST00000436561 601 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 LINC02210-201ENST00000444561 288 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 RNF138P2-201ENST00000603490 592 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC090607.5-201ENST00000615692 224 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC007996.1-201ENST00000620414 2821 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC013268.3-201ENST00000262716 2324 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 RPL10P10-201ENST00000403509 664 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 RPS16P5-201ENST00000406501 404 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 GSTM5P1-201ENST00000434751 660 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 AC026979.1-201ENST00000492525 396 ntBASIC6.56□□□□□ -1.36
CCDC88AQ3V6T2 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms