Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC7.04□□□□□ -1.28
HOXC9P31274 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC7.04□□□□□ -1.28
HOXC9P31274 MIR4691-201ENST00000583764 85 ntBASIC7.04□□□□□ -1.28
HOXC9P31274 AC112694.2-201ENST00000623697 768 ntBASIC7.04□□□□□ -1.28
HOXC9P31274 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
HOXC9P31274 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HOXC9P31274 AC018765.1-201ENST00000623357 3446 ntBASIC7.04□□□□□ -1.28
HOXC9P31274 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HOXC9P31274 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HOXC9P31274 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
HOXC9P31274 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HOXC9P31274 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
HOXC9P31274 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
HOXC9P31274 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC7.04□□□□□ -1.28
HOXC9P31274 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HOXC9P31274 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HOXC9P31274 DCN-218ENST00000551354 2924 ntTSL 3 BASIC7.04□□□□□ -1.28
HOXC9P31274 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC7.03□□□□□ -1.28
HOXC9P31274 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 AL035419.1-201ENST00000397037 564 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 PPIAP9-201ENST00000403866 498 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 TRGV5P-201ENST00000419915 354 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 AC073465.2-201ENST00000440938 498 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC7.03□□□□□ -1.28
HOXC9P31274 AC092324.1-201ENST00000468671 324 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 AP000797.2-201ENST00000475768 606 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 AC007686.1-201ENST00000488511 463 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 OR4A43P-201ENST00000532938 908 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 PCNPP1-201ENST00000552501 511 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
HOXC9P31274 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
HOXC9P31274 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC7.03□□□□□ -1.28
HOXC9P31274 AC091905.4-201ENST00000623432 202 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 AP003400.3-201ENST00000624904 346 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 AC015799.1-201ENST00000622996 3122 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
HOXC9P31274 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.03□□□□□ -1.28
HOXC9P31274 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 MIPEPP2-201ENST00000422560 1819 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 MTCO1P46-201ENST00000451639 1491 ntBASIC7.03□□□□□ -1.28
HOXC9P31274 DMD-211ENST00000378707 7410 ntTSL 5 BASIC7.03□□□□□ -1.28
HOXC9P31274 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
HOXC9P31274 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
HOXC9P31274 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC7.03□□□□□ -1.28
HOXC9P31274 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC7.02□□□□□ -1.28
HOXC9P31274 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC7.02□□□□□ -1.28
HOXC9P31274 KYNUP3-201ENST00000574386 1341 ntBASIC7.02□□□□□ -1.28
HOXC9P31274 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
HOXC9P31274 NLN-202ENST00000502464 8354 ntTSL 5 BASIC7.02□□□□□ -1.29
HOXC9P31274 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
HOXC9P31274 DDX39BP1-205ENST00000422507 192 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 BX679664.2-201ENST00000439282 283 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC079168.1-201ENST00000458741 345 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC012400.1-201ENST00000518452 381 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC008814.1-201ENST00000603797 406 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 AC009027.1-201ENST00000604510 479 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC7.02□□□□□ -1.29
HOXC9P31274 AC232271.1-201ENST00000602455 2715 ntBASIC7.02□□□□□ -1.29
HOXC9P31274 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
HOXC9P31274 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC7.02□□□□□ -1.29
HOXC9P31274 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
HOXC9P31274 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
HOXC9P31274 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
HOXC9P31274 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
HOXC9P31274 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC079097.1-201ENST00000512187 1399 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 STX19-201ENST00000315099 1158 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 RN7SKP95-201ENST00000362860 303 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 RNA5SP455-201ENST00000365190 119 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 RNA5SP87-201ENST00000384155 118 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC009784.1-201ENST00000426484 460 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC7.01□□□□□ -1.29
HOXC9P31274 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC7.01□□□□□ -1.29
HOXC9P31274 RPL34P20-201ENST00000442771 351 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
HOXC9P31274 RPS29P22-201ENST00000472363 168 ntBASIC7.01□□□□□ -1.29
HOXC9P31274 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 137.1 ms