Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC018809.2-201ENST00000602436 3823 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AL022311.1-201ENST00000623726 19416 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 MIR323A-201ENST00000362199 86 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 RNA5SP187-201ENST00000384400 119 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 MIR551A-201ENST00000385042 96 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 MIR143-201ENST00000385300 106 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AL589994.1-201ENST00000404962 340 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 RPL5P25-201ENST00000441148 775 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AL161722.1-201ENST00000446972 1032 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AL358876.1-201ENST00000453364 1075 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC083899.1-201ENST00000454465 3819 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 RN7SL466P-201ENST00000497546 295 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC027026.1-201ENST00000532323 742 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC027544.3-201ENST00000535082 757 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC009803.1-202ENST00000551940 544 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC115989.2-201ENST00000578640 563 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC012616.1-201ENST00000600294 197 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 AL353729.2-201ENST00000605859 1249 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 FAM72A-208ENST00000607379 1139 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC073869.7-201ENST00000640874 297 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 MT-RNR2-201ENST00000387347 1559 ntBASIC5.53□□□□□ -1.52
VPS35Q96QK1 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS35Q96QK1 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS35Q96QK1 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC011933.2-201ENST00000578539 2790 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AL513548.1-201ENST00000562904 1724 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AL512422.1-201ENST00000407033 553 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC007161.1-204ENST00000423039 460 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 CHEK2P5-201ENST00000423877 246 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 RIMKLBP2-201ENST00000424737 654 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 OR6D1P-201ENST00000436165 939 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AL391987.1-201ENST00000441025 200 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 RPSAP39-201ENST00000467439 883 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 RN7SL101P-201ENST00000496350 279 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 GLUD1P3-202ENST00000508551 200 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC122688.1-201ENST00000541494 223 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC015720.2-201ENST00000567709 334 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC011445.2-201ENST00000599274 173 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 AC015712.7-201ENST00000615211 635 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.52□□□□□ -1.53
VPS35Q96QK1 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
VPS35Q96QK1 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
VPS35Q96QK1 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.51□□□□□ -1.53
VPS35Q96QK1 AC093591.2-201ENST00000565254 3843 ntBASIC5.51□□□□□ -1.53
VPS35Q96QK1 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms