Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PTP4A1P7-201ENST00000423476 514 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 LINC01291-203ENST00000435984 565 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AL512593.1-201ENST00000444758 779 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 RN7SL269P-201ENST00000467795 305 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 MTND4LP2-201ENST00000502312 285 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 OR5M14P-201ENST00000506803 618 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC092593.2-201ENST00000513866 913 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AC103833.1-201ENST00000517442 172 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AP003066.2-201ENST00000529375 555 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 PCNAP1-202ENST00000595299 752 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC011492.1-201ENST00000600023 315 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 SOX9-AS1-216ENST00000602213 821 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC004241.3-201ENST00000611728 517 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AC009090.3-201ENST00000616553 565 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AC078880.5-201ENST00000617845 421 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AL445670.1-201ENST00000618889 801 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.83□□□□□ -1.32
COL6A1P12109 AL357562.1-201ENST00000624911 609 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC6.83□□□□□ -1.32
COL6A1P12109 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.83□□□□□ -1.32
COL6A1P12109 AP001153.1-201ENST00000641024 338 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 CNOT6LP1-201ENST00000559681 1462 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL6A1P12109 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC6.83□□□□□ -1.32
COL6A1P12109 MFSD8-220ENST00000641243 1422 ntBASIC6.83□□□□□ -1.32
COL6A1P12109 AC020633.1-201ENST00000468439 2247 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 AC120338.1-201ENST00000625074 1541 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 NXF2B-203ENST00000604395 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 NXF2-201ENST00000604790 2143 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 ZSCAN12-202ENST00000396827 3909 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 TTLL5-217ENST00000556893 3071 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 RNA5SP46-201ENST00000362370 120 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 RNU6-171P-201ENST00000384354 107 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 RMRPP5-201ENST00000411156 267 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC6.82□□□□□ -1.32
COL6A1P12109 AL158827.1-201ENST00000416300 391 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 VN1R108P-201ENST00000431580 830 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 LARS2-AS1-201ENST00000442534 575 ntTSL 4 BASIC6.82□□□□□ -1.32
COL6A1P12109 Z73417.1-201ENST00000447373 778 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 RAB28P3-201ENST00000448325 597 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 RBMY2TP-201ENST00000451162 947 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC004263.1-201ENST00000479327 332 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 SIAH1P1-201ENST00000479411 923 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC6.82□□□□□ -1.32
COL6A1P12109 SNORA58-201ENST00000505219 137 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 AC010486.3-201ENST00000511602 785 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC087664.2-202ENST00000521274 515 ntTSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC6.82□□□□□ -1.32
COL6A1P12109 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 ZNF971P-201ENST00000562068 1249 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.82□□□□□ -1.32
COL6A1P12109 MIR7155-201ENST00000615925 56 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC037198.3-201ENST00000616754 526 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 AL121594.5-201ENST00000631724 573 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 AL021877.2-201ENST00000624442 10684 ntBASIC6.82□□□□□ -1.32
COL6A1P12109 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
COL6A1P12109 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
COL6A1P12109 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC6.82□□□□□ -1.32
COL6A1P12109 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
COL6A1P12109 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.81□□□□□ -1.32
COL6A1P12109 COG2-209ENST00000534989 2963 ntTSL 2 BASIC6.81□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms