Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
HOXD4P09016 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
HOXD4P09016 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HOXD4P09016 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
HOXD4P09016 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HOXD4P09016 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.18□□□□□ -1.58
HOXD4P09016 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.17□□□□□ -1.58
HOXD4P09016 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 SNORD1C-201ENST00000363315 78 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 U3.7-201ENST00000363668 216 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 SPTLC1P2-201ENST00000407089 121 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 AP000534.2-201ENST00000412729 568 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXD4P09016 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 AC006055.1-201ENST00000432423 411 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXD4P09016 AC138761.5-201ENST00000433967 325 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 LDHBP2-201ENST00000456969 1005 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 AC112184.1-201ENST00000505179 312 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXD4P09016 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 AL121594.2-201ENST00000541658 472 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXD4P09016 AC015720.2-201ENST00000567709 334 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXD4P09016 AC006272.2-201ENST00000594725 163 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXD4P09016 AC090607.5-201ENST00000615692 224 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 AC016769.4-201ENST00000616893 535 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 AC018445.2-201ENST00000622987 260 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 AC022919.1-201ENST00000624979 626 ntBASIC5.17□□□□□ -1.58
HOXD4P09016 NAT1-201ENST00000307719 1815 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
HOXD4P09016 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXD4P09016 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXD4P09016 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXD4P09016 CASC19-248ENST00000641674 1356 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AC130304.1-201ENST00000622942 2385 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXD4P09016 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXD4P09016 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXD4P09016 AC007842.1-201ENST00000597336 2039 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC5.16□□□□□ -1.58
HOXD4P09016 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HOXD4P09016 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXD4P09016 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXD4P09016 AL596448.1-201ENST00000415024 392 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AC007394.1-201ENST00000421941 531 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXD4P09016 HSPE1P16-201ENST00000426640 348 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXD4P09016 AC096775.1-201ENST00000437724 448 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXD4P09016 EEF1B2P6-201ENST00000445713 673 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXD4P09016 AC093166.4-201ENST00000457867 318 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 RNU7-157P-201ENST00000459600 66 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 RPS4XP12-201ENST00000461747 709 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXD4P09016 OARD1-211ENST00000480585 829 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXD4P09016 AC111000.6-201ENST00000514471 709 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 RN7SKP288-201ENST00000516227 268 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 MIR2117-201ENST00000516780 80 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AP003028.1-203ENST00000525832 444 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXD4P09016 AC027026.1-201ENST00000532323 742 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 C15orf41-204ENST00000562877 764 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXD4P09016 RBM22P12-201ENST00000567098 1255 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 MIR1269B-201ENST00000580405 75 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 AC006115.2-201ENST00000596823 202 ntBASIC5.16□□□□□ -1.58
HOXD4P09016 NANOGP3-201ENST00000605855 286 ntBASIC5.16□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms