Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 PPIAP9-201ENST00000403866 498 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 RPL12P17-201ENST00000432393 498 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 UBE2V2P1-201ENST00000434717 398 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC138409.2-202ENST00000507274 458 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC111000.6-201ENST00000514471 709 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AC007938.2-201ENST00000604666 2634 ntBASIC5.49□□□□□ -1.53
LHX3Q9UBR4 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
LHX3Q9UBR4 AL929601.4-201ENST00000613011 1341 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 RPL7L1P9-201ENST00000431298 745 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC138761.5-201ENST00000433967 325 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC018638.3-201ENST00000461273 132 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC092754.1-201ENST00000472975 479 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 COPS8P2-201ENST00000473228 627 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 TRBV8-1-201ENST00000481590 279 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AL133372.1-201ENST00000493565 745 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AP000926.3-201ENST00000497201 299 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC079064.1-201ENST00000528365 362 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC060766.1-201ENST00000590824 627 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 CASC19-264ENST00000641912 1184 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 TTC41P-205ENST00000551270 3963 ntBASIC5.48□□□□□ -1.53
LHX3Q9UBR4 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
LHX3Q9UBR4 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 RABGAP1L-208ENST00000392064 6282 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 CCAT2-201ENST00000630920 1752 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 Z83820.1-201ENST00000456978 1499 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC015799.1-201ENST00000622996 3122 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AL589994.1-201ENST00000404962 340 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 MTND4LP21-201ENST00000415303 295 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AL133482.1-201ENST00000415988 498 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AL133325.1-201ENST00000421090 382 ntBASIC5.47□□□□□ -1.53
LHX3Q9UBR4 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.47□□□□□ -1.53
LHX3Q9UBR4 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms