Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 EIF1P7-201ENST00000487533 337 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RN7SL30P-201ENST00000488416 306 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 TOMM22P4-201ENST00000511318 336 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 snoU109.5-201ENST00000516231 132 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AL121594.2-201ENST00000541658 472 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 MIR4433B-201ENST00000581329 102 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC009303.3-201ENST00000591103 736 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AC008536.1-201ENST00000602872 669 ntBASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.52□□□□□ -1.53
CCDC3Q9BQI4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 RNA5SP234-201ENST00000363916 119 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 SNORA70-201ENST00000384436 135 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 RPL11P3-201ENST00000395256 523 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 RPL35AP24-201ENST00000413846 330 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AL450023.1-201ENST00000450868 751 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AL356390.1-201ENST00000455684 397 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC004129.2-201ENST00000457229 287 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 RN7SL51P-201ENST00000468230 285 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 SEPT7P6-201ENST00000469999 1143 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 TRBV8-1-201ENST00000481590 279 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 RPL32P9-201ENST00000487963 407 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC073610.1-201ENST00000489971 396 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC006499.3-201ENST00000506077 748 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC004825.1-201ENST00000555068 586 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC007495.2-201ENST00000562822 459 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AL163952.1-202ENST00000569625 600 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC125494.2-201ENST00000602431 657 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC005229.3-201ENST00000603438 323 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 PPATP2-201ENST00000605635 508 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 MIR6730-201ENST00000622213 67 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC025470.1-201ENST00000510053 2032 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 IARS-213ENST00000627121 4587 ntTSL 5 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 AC018809.2-201ENST00000602436 3823 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 PABPC1P6-201ENST00000445594 1829 ntBASIC5.51□□□□□ -1.53
CCDC3Q9BQI4 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AC083837.1-201ENST00000565297 2994 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms