Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 RNA5SP91-201ENST00000390902 119 ntBASIC5.25□□□□□ -1.57
SOX3P41225 OR6E1P-201ENST00000414424 923 ntBASIC5.25□□□□□ -1.57
SOX3P41225 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 FAM204CP-201ENST00000424489 642 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC113412.1-201ENST00000425840 504 ntBASIC5.25□□□□□ -1.57
SOX3P41225 BTBD7P2-201ENST00000441962 620 ntBASIC5.25□□□□□ -1.57
SOX3P41225 THAP12P8-201ENST00000447914 2115 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC018638.3-201ENST00000461273 132 ntBASIC5.25□□□□□ -1.57
SOX3P41225 RPS23P2-201ENST00000463671 415 ntBASIC5.25□□□□□ -1.57
SOX3P41225 SEPT7P6-201ENST00000469999 1143 ntBASIC5.25□□□□□ -1.57
SOX3P41225 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 DEFB109A-201ENST00000482450 265 ntBASIC5.25□□□□□ -1.57
SOX3P41225 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 DUTP1-201ENST00000493631 470 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 AC074087.1-201ENST00000512059 724 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC5.25□□□□□ -1.57
SOX3P41225 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC5.25□□□□□ -1.57
SOX3P41225 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.25□□□□□ -1.57
SOX3P41225 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.25□□□□□ -1.57
SOX3P41225 AL049872.1-201ENST00000556323 322 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.25□□□□□ -1.57
SOX3P41225 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.25□□□□□ -1.57
SOX3P41225 AC019322.1-201ENST00000571869 389 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.25□□□□□ -1.57
SOX3P41225 FO393422.1-201ENST00000603908 708 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC096586.2-201ENST00000610260 441 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AC008115.3-201ENST00000614874 549 ntBASIC5.25□□□□□ -1.57
SOX3P41225 MIR6133-201ENST00000617057 108 ntBASIC5.25□□□□□ -1.57
SOX3P41225 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.25□□□□□ -1.57
SOX3P41225 CFTRP2-201ENST00000634304 199 ntBASIC5.25□□□□□ -1.57
SOX3P41225 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.25□□□□□ -1.57
SOX3P41225 YES1P1-201ENST00000418510 1628 ntBASIC5.25□□□□□ -1.57
SOX3P41225 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 CASC19-255ENST00000641733 1385 ntBASIC5.25□□□□□ -1.57
SOX3P41225 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.25□□□□□ -1.57
SOX3P41225 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SOX3P41225 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
SOX3P41225 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
SOX3P41225 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SOX3P41225 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
SOX3P41225 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 RNA5SP30-201ENST00000365552 115 ntBASIC5.24□□□□□ -1.57
SOX3P41225 U3.23-201ENST00000391132 200 ntBASIC5.24□□□□□ -1.57
SOX3P41225 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 RPS6P23-201ENST00000413224 722 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AL596448.1-201ENST00000415024 392 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC079809.1-201ENST00000415468 276 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 FMO7P-201ENST00000436045 768 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 RPL5P25-201ENST00000441148 775 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC073909.1-201ENST00000447112 999 ntBASIC5.24□□□□□ -1.57
SOX3P41225 NDUFA5P8-201ENST00000449019 346 ntBASIC5.24□□□□□ -1.57
SOX3P41225 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 MEMO1P4-201ENST00000453590 386 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 OR2A3P-201ENST00000493774 953 ntBASIC5.24□□□□□ -1.57
SOX3P41225 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 MTND2P31-201ENST00000512602 616 ntBASIC5.24□□□□□ -1.57
SOX3P41225 RNA5SP362-201ENST00000516048 118 ntBASIC5.24□□□□□ -1.57
SOX3P41225 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC5.24□□□□□ -1.57
SOX3P41225 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.24□□□□□ -1.57
SOX3P41225 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SOX3P41225 HSPE1P2-201ENST00000554777 306 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AL049874.4-201ENST00000557593 255 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.24□□□□□ -1.57
SOX3P41225 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 AC107993.1-201ENST00000591343 684 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC005229.3-201ENST00000603438 323 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC104695.2-201ENST00000605056 775 ntBASIC5.24□□□□□ -1.57
SOX3P41225 GMCL1P2-201ENST00000605230 823 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.24□□□□□ -1.57
SOX3P41225 FAM72A-208ENST00000607379 1139 ntBASIC5.24□□□□□ -1.57
SOX3P41225 AC239803.2-201ENST00000610161 430 ntBASIC5.24□□□□□ -1.57
SOX3P41225 CU639417.4-201ENST00000623928 207 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms