Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC6.22□□□□□ -1.41
BDNFP23560 NPM1P19-201ENST00000450070 712 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AL445665.1-202ENST00000452436 324 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC6.22□□□□□ -1.41
BDNFP23560 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC6.22□□□□□ -1.41
BDNFP23560 AL603882.1-201ENST00000463059 681 ntBASIC6.22□□□□□ -1.41
BDNFP23560 RPL21P6-201ENST00000479171 504 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AL035690.1-201ENST00000490892 383 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AC090543.1-201ENST00000492168 485 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC6.22□□□□□ -1.41
BDNFP23560 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC6.22□□□□□ -1.41
BDNFP23560 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.22□□□□□ -1.41
BDNFP23560 RNA5SP228-201ENST00000516232 133 ntBASIC6.22□□□□□ -1.41
BDNFP23560 IGKV1OR22-1-201ENST00000521497 360 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.22□□□□□ -1.41
BDNFP23560 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC6.22□□□□□ -1.41
BDNFP23560 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC6.22□□□□□ -1.41
BDNFP23560 AL133247.2-201ENST00000603236 482 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC6.22□□□□□ -1.41
BDNFP23560 AC074276.2-201ENST00000619891 348 ntBASIC6.22□□□□□ -1.41
BDNFP23560 AC127024.6-201ENST00000621598 424 ntBASIC6.22□□□□□ -1.41
BDNFP23560 LINC00216-201ENST00000623548 1126 ntBASIC6.22□□□□□ -1.41
BDNFP23560 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BDNFP23560 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BDNFP23560 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BDNFP23560 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC6.22□□□□□ -1.41
BDNFP23560 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.22□□□□□ -1.41
BDNFP23560 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC6.22□□□□□ -1.41
BDNFP23560 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
BDNFP23560 HSPD1P11-201ENST00000508643 1702 ntBASIC6.22□□□□□ -1.41
BDNFP23560 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC6.22□□□□□ -1.41
BDNFP23560 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.22□□□□□ -1.41
BDNFP23560 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
BDNFP23560 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
BDNFP23560 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC6.21□□□□□ -1.41
BDNFP23560 AC009313.2-201ENST00000417893 1941 ntBASIC6.21□□□□□ -1.41
BDNFP23560 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC6.21□□□□□ -1.41
BDNFP23560 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 AC017002.4-201ENST00000604721 1525 ntBASIC6.21□□□□□ -1.42
BDNFP23560 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 OR9K1P-202ENST00000641111 3217 ntBASIC6.21□□□□□ -1.42
BDNFP23560 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
BDNFP23560 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 RNA5SP435-201ENST00000364044 108 ntBASIC6.21□□□□□ -1.42
BDNFP23560 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.21□□□□□ -1.42
BDNFP23560 VDAC2P1-201ENST00000399358 958 ntBASIC6.21□□□□□ -1.42
BDNFP23560 OR7E101P-201ENST00000400428 513 ntBASIC6.21□□□□□ -1.42
BDNFP23560 RPS3AP2-201ENST00000407190 754 ntBASIC6.21□□□□□ -1.42
BDNFP23560 RNA5SP296-201ENST00000410523 111 ntBASIC6.21□□□□□ -1.42
BDNFP23560 RNA5SP251-201ENST00000410614 137 ntBASIC6.21□□□□□ -1.42
BDNFP23560 RN7SKP222-201ENST00000410651 315 ntBASIC6.21□□□□□ -1.42
BDNFP23560 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.21□□□□□ -1.42
BDNFP23560 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 MRPS33P4-201ENST00000434892 317 ntBASIC6.21□□□□□ -1.42
BDNFP23560 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC6.21□□□□□ -1.42
BDNFP23560 RPSAP37-201ENST00000470913 821 ntBASIC6.21□□□□□ -1.42
BDNFP23560 AC099521.1-201ENST00000482557 334 ntBASIC6.21□□□□□ -1.42
BDNFP23560 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC6.21□□□□□ -1.42
BDNFP23560 SNORA70.20-201ENST00000516848 126 ntBASIC6.21□□□□□ -1.42
BDNFP23560 HMGN2P36-201ENST00000529541 409 ntBASIC6.21□□□□□ -1.42
BDNFP23560 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 AC091078.2-201ENST00000557145 559 ntBASIC6.21□□□□□ -1.42
BDNFP23560 U95743.1-201ENST00000573369 1001 ntTSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 MRO-208ENST00000588444 866 ntTSL 3 BASIC6.21□□□□□ -1.42
BDNFP23560 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC6.21□□□□□ -1.42
BDNFP23560 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC6.21□□□□□ -1.42
BDNFP23560 AL355480.1-201ENST00000629041 99 ntBASIC6.21□□□□□ -1.42
BDNFP23560 AP000756.2-201ENST00000624168 2567 ntBASIC6.21□□□□□ -1.42
BDNFP23560 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.21□□□□□ -1.42
BDNFP23560 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.21□□□□□ -1.42
BDNFP23560 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
BDNFP23560 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC6.21□□□□□ -1.42
BDNFP23560 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
BDNFP23560 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 PHKBP1-201ENST00000450951 1951 ntBASIC6.2□□□□□ -1.42
BDNFP23560 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC6.2□□□□□ -1.42
BDNFP23560 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
BDNFP23560 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms