Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
APOEP02649 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.8□□□□□ -1.48
APOEP02649 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.8□□□□□ -1.48
APOEP02649 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.8□□□□□ -1.48
APOEP02649 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.8□□□□□ -1.48
APOEP02649 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.8□□□□□ -1.48
APOEP02649 AL589674.2-201ENST00000604304 337 ntBASIC5.8□□□□□ -1.48
APOEP02649 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.8□□□□□ -1.48
APOEP02649 AC138965.3-201ENST00000623875 498 ntBASIC5.8□□□□□ -1.48
APOEP02649 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.8□□□□□ -1.48
APOEP02649 AL049767.1-202ENST00000637826 242 ntBASIC5.8□□□□□ -1.48
APOEP02649 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.8□□□□□ -1.48
APOEP02649 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
APOEP02649 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
APOEP02649 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.8□□□□□ -1.48
APOEP02649 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
APOEP02649 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
APOEP02649 OR4F13P-202ENST00000560066 2054 ntBASIC5.79□□□□□ -1.48
APOEP02649 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.79□□□□□ -1.48
APOEP02649 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.79□□□□□ -1.48
APOEP02649 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 RNA5SP326-201ENST00000363209 110 ntBASIC5.79□□□□□ -1.48
APOEP02649 RN7SKP28-201ENST00000364770 305 ntBASIC5.79□□□□□ -1.48
APOEP02649 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 AL121776.1-201ENST00000429337 372 ntBASIC5.79□□□□□ -1.48
APOEP02649 NPM1P18-201ENST00000434232 732 ntBASIC5.79□□□□□ -1.48
APOEP02649 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 SNORD125-201ENST00000459538 96 ntBASIC5.79□□□□□ -1.48
APOEP02649 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 RPS17P5-201ENST00000498293 408 ntBASIC5.79□□□□□ -1.48
APOEP02649 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.79□□□□□ -1.48
APOEP02649 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.79□□□□□ -1.48
APOEP02649 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.79□□□□□ -1.48
APOEP02649 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.79□□□□□ -1.48
APOEP02649 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.79□□□□□ -1.48
APOEP02649 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 AC015720.2-201ENST00000567709 334 ntBASIC5.79□□□□□ -1.48
APOEP02649 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC5.79□□□□□ -1.48
APOEP02649 AC012616.1-201ENST00000600294 197 ntBASIC5.79□□□□□ -1.48
APOEP02649 AC007786.3-201ENST00000615154 596 ntBASIC5.79□□□□□ -1.48
APOEP02649 AC025574.2-201ENST00000615621 514 ntBASIC5.79□□□□□ -1.48
APOEP02649 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.79□□□□□ -1.48
APOEP02649 AL355480.1-201ENST00000629041 99 ntBASIC5.79□□□□□ -1.48
APOEP02649 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.79□□□□□ -1.48
APOEP02649 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.79□□□□□ -1.48
APOEP02649 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.79□□□□□ -1.48
APOEP02649 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 AL137058.3-201ENST00000624531 3099 ntBASIC5.79□□□□□ -1.48
APOEP02649 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.79□□□□□ -1.48
APOEP02649 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.79□□□□□ -1.48
APOEP02649 AP005432.1-201ENST00000580891 3485 ntBASIC5.79□□□□□ -1.48
APOEP02649 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.79□□□□□ -1.48
APOEP02649 HSPD1P7-201ENST00000447985 1686 ntBASIC5.79□□□□□ -1.48
APOEP02649 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.79□□□□□ -1.48
APOEP02649 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.78□□□□□ -1.48
APOEP02649 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
APOEP02649 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.78□□□□□ -1.48
APOEP02649 RN7SKP124-201ENST00000364730 341 ntBASIC5.78□□□□□ -1.48
APOEP02649 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.78□□□□□ -1.48
APOEP02649 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 RPS27AP6-201ENST00000427962 448 ntBASIC5.78□□□□□ -1.48
APOEP02649 OR6D1P-201ENST00000436165 939 ntBASIC5.78□□□□□ -1.48
APOEP02649 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 AL596266.1-201ENST00000448132 400 ntBASIC5.78□□□□□ -1.48
APOEP02649 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.78□□□□□ -1.48
APOEP02649 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.78□□□□□ -1.48
APOEP02649 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.78□□□□□ -1.48
APOEP02649 RNA5SP362-201ENST00000516048 118 ntBASIC5.78□□□□□ -1.48
APOEP02649 RN7SKP99-201ENST00000517028 307 ntBASIC5.78□□□□□ -1.48
APOEP02649 AC027026.1-201ENST00000532323 742 ntBASIC5.78□□□□□ -1.48
APOEP02649 AC009852.2-201ENST00000567898 485 ntBASIC5.78□□□□□ -1.48
APOEP02649 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.78□□□□□ -1.48
APOEP02649 MIR6133-201ENST00000617057 108 ntBASIC5.78□□□□□ -1.48
APOEP02649 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
APOEP02649 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
APOEP02649 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.78□□□□□ -1.48
APOEP02649 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.77□□□□□ -1.49
APOEP02649 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
APOEP02649 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
APOEP02649 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
APOEP02649 ADAM24P-201ENST00000398655 2101 ntBASIC5.77□□□□□ -1.49
APOEP02649 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
APOEP02649 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.77□□□□□ -1.49
APOEP02649 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
APOEP02649 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms