Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Nkx3-1P97436 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Nkx3-1P97436 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm37811-201ENSMUST00000192416 2601 ntBASIC14.55□□□□□ -0.08
Nkx3-1P97436 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm15794-201ENSMUST00000120182 631 ntBASIC14.55□□□□□ -0.08
Nkx3-1P97436 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Gdf15-201ENSMUST00000003808 1545 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Camsap3-212ENSMUST00000208240 2572 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Nkx3-1P97436 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Gm19439-201ENSMUST00000198195 2273 ntBASIC14.54□□□□□ -0.08
Nkx3-1P97436 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC14.54□□□□□ -0.08
Nkx3-1P97436 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Gm5828-201ENSMUST00000071842 1860 ntBASIC14.54□□□□□ -0.08
Nkx3-1P97436 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Nkx3-1P97436 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Nkx3-1P97436 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Nkx3-1P97436 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Nkx3-1P97436 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Nkx3-1P97436 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Nkx3-1P97436 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Nkx3-1P97436 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Nkx3-1P97436 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms