Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR10T1P-201ENST00000424327 947 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 RBMY2QP-201ENST00000429799 1147 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.18□□□□□ -1.26
HOXC9P31274 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 AP001922.4-201ENST00000526967 290 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 AC134349.2-201ENST00000535136 910 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 OR11H3P-201ENST00000554547 982 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC7.18□□□□□ -1.26
HOXC9P31274 MIR6798-201ENST00000612887 67 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 AC135068.5-201ENST00000624197 983 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC7.18□□□□□ -1.26
HOXC9P31274 AL034549.2-201ENST00000618285 3373 ntBASIC7.18□□□□□ -1.26
HOXC9P31274 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
HOXC9P31274 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC7.17□□□□□ -1.26
HOXC9P31274 PANDAR-201ENST00000629595 1506 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC7.17□□□□□ -1.26
HOXC9P31274 TSPAN14-207ENST00000429989 16183 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 DNAJA1P4-201ENST00000406473 1166 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC211486.3-201ENST00000412694 621 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC7.17□□□□□ -1.26
HOXC9P31274 Z80107.2-201ENST00000445127 392 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC092647.2-201ENST00000452998 253 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC7.17□□□□□ -1.26
HOXC9P31274 SNORD125-201ENST00000459538 96 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC092754.1-201ENST00000472975 479 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC058823.1-201ENST00000485315 474 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC021106.1-201ENST00000509020 1058 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC7.17□□□□□ -1.26
HOXC9P31274 AC092490.3-201ENST00000545370 572 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC7.17□□□□□ -1.26
HOXC9P31274 AC060780.2-201ENST00000589047 198 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AL596275.2-208ENST00000641192 594 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC7.17□□□□□ -1.26
HOXC9P31274 LINC02477-201ENST00000512652 1417 ntTSL 5 BASIC7.17□□□□□ -1.26
HOXC9P31274 AL158152.1-201ENST00000602652 1435 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 AC107980.1-201ENST00000558671 3355 ntBASIC7.17□□□□□ -1.26
HOXC9P31274 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC7.17□□□□□ -1.26
HOXC9P31274 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
HOXC9P31274 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 DTNA-206ENST00000399121 6490 ntAPPRIS ALT2 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 AC005225.5-201ENST00000623547 2225 ntBASIC7.16□□□□□ -1.26
HOXC9P31274 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC7.16□□□□□ -1.26
HOXC9P31274 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 MR1-209ENST00000617803 7584 ntTSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC7.16□□□□□ -1.26
HOXC9P31274 FABP7P2-201ENST00000429946 379 ntBASIC7.16□□□□□ -1.26
HOXC9P31274 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC7.16□□□□□ -1.26
HOXC9P31274 AC092647.3-201ENST00000443044 633 ntBASIC7.16□□□□□ -1.26
HOXC9P31274 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 GAPDHP62-201ENST00000515313 990 ntBASIC7.16□□□□□ -1.26
HOXC9P31274 RN7SKP147-201ENST00000517154 244 ntBASIC7.16□□□□□ -1.26
HOXC9P31274 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC7.16□□□□□ -1.26
HOXC9P31274 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC7.16□□□□□ -1.26
HOXC9P31274 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC7.16□□□□□ -1.26
HOXC9P31274 AC105036.1-201ENST00000566222 271 ntBASIC7.16□□□□□ -1.26
HOXC9P31274 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.16□□□□□ -1.26
HOXC9P31274 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 FBXL13-208ENST00000456695 1605 ntAPPRIS P1 TSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC7.16□□□□□ -1.26
HOXC9P31274 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
HOXC9P31274 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC7.15□□□□□ -1.26
HOXC9P31274 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC7.15□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms