Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHOX2O60902 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.52□□□□□ -1.53
SHOX2O60902 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.52□□□□□ -1.53
SHOX2O60902 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SHOX2O60902 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHOX2O60902 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
SHOX2O60902 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHOX2O60902 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHOX2O60902 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHOX2O60902 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHOX2O60902 AC021242.1-201ENST00000507315 2035 ntBASIC5.52□□□□□ -1.53
SHOX2O60902 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 AP001273.1-201ENST00000624493 3152 ntBASIC5.51□□□□□ -1.53
SHOX2O60902 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.51□□□□□ -1.53
SHOX2O60902 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 RBPJP5-201ENST00000449433 1447 ntBASIC5.51□□□□□ -1.53
SHOX2O60902 AL390726.6-201ENST00000637760 1654 ntTSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SHOX2O60902 PWAR1-201ENST00000624188 2414 ntBASIC5.51□□□□□ -1.53
SHOX2O60902 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 PRELID1P1-201ENST00000403549 660 ntBASIC5.51□□□□□ -1.53
SHOX2O60902 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.51□□□□□ -1.53
SHOX2O60902 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.51□□□□□ -1.53
SHOX2O60902 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 SUMO2P1-206ENST00000445436 284 ntBASIC5.51□□□□□ -1.53
SHOX2O60902 AC095033.1-201ENST00000451611 1096 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC5.51□□□□□ -1.53
SHOX2O60902 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC5.51□□□□□ -1.53
SHOX2O60902 GTF2IP11-201ENST00000526931 420 ntBASIC5.51□□□□□ -1.53
SHOX2O60902 AC078922.1-201ENST00000547547 434 ntTSL 3 BASIC5.51□□□□□ -1.53
SHOX2O60902 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.51□□□□□ -1.53
SHOX2O60902 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC5.51□□□□□ -1.53
SHOX2O60902 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHOX2O60902 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SHOX2O60902 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.5□□□□□ -1.53
SHOX2O60902 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.5□□□□□ -1.53
SHOX2O60902 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
SHOX2O60902 SEMA5A-AS1-201ENST00000510879 1679 ntTSL 2 BASIC5.5□□□□□ -1.53
SHOX2O60902 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHOX2O60902 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.5□□□□□ -1.53
SHOX2O60902 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHOX2O60902 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHOX2O60902 ZNF66-202ENST00000360204 1120 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
SHOX2O60902 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHOX2O60902 RN7SKP28-201ENST00000364770 305 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SHOX2O60902 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.5□□□□□ -1.53
SHOX2O60902 AL357752.1-201ENST00000412817 349 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 VN1R3-201ENST00000418822 919 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 VN1R20P-201ENST00000425215 966 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 AP002856.1-201ENST00000447864 562 ntTSL 4 BASIC5.5□□□□□ -1.53
SHOX2O60902 AL450023.1-201ENST00000450868 751 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SHOX2O60902 NDUFB2-210ENST00000475276 539 ntTSL 4 BASIC5.5□□□□□ -1.53
SHOX2O60902 CBX1P5-201ENST00000475330 559 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 RPL5P22-201ENST00000480199 884 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 RPL12P30-201ENST00000488389 499 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 AC114324.2-202ENST00000503812 134 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 ZNF519P4-201ENST00000514008 125 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.5□□□□□ -1.53
SHOX2O60902 RNA5SP303-201ENST00000516192 130 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.5□□□□□ -1.53
SHOX2O60902 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.5□□□□□ -1.53
SHOX2O60902 OOSP1P2-201ENST00000579644 351 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 MIR4311-201ENST00000580794 100 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 H3F3BP2-201ENST00000583907 357 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 AC073869.8-201ENST00000641806 335 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.5□□□□□ -1.53
SHOX2O60902 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SHOX2O60902 AC126323.6-202ENST00000568092 3511 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.5□□□□□ -1.53
SHOX2O60902 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.5□□□□□ -1.53
SHOX2O60902 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
SHOX2O60902 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
SHOX2O60902 MAPK10-349ENST00000641767 3661 ntBASIC5.5□□□□□ -1.53
SHOX2O60902 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
SHOX2O60902 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
SHOX2O60902 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.49□□□□□ -1.53
SHOX2O60902 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
SHOX2O60902 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SHOX2O60902 OR9G4-201ENST00000302957 984 ntBASIC5.49□□□□□ -1.53
SHOX2O60902 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC5.49□□□□□ -1.53
SHOX2O60902 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHOX2O60902 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms