Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL391422.1-201ENST00000402155 436 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 RMRPP5-201ENST00000411156 267 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 RPL7P39-201ENST00000481157 744 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 RPL38P3-201ENST00000484463 213 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 RPL32P33-201ENST00000487023 394 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AGGF1P3-201ENST00000493675 1213 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AC231760.1-201ENST00000498002 260 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 OR4A6P-201ENST00000534364 970 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AL451049.1-201ENST00000608672 497 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 MIR7155-201ENST00000615925 56 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 AC008115.4-201ENST00000619780 775 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.83□□□□□ -1.48
HDDC3Q8N4P3 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC020633.1-201ENST00000468439 2247 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC005225.5-201ENST00000623547 2225 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL357752.1-201ENST00000412817 349 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 OR6E1P-201ENST00000414424 923 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC015977.1-201ENST00000418887 292 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC005297.1-201ENST00000444765 862 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 FRG2FP-204ENST00000453982 852 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 SEPT7P3-201ENST00000455017 621 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 RNU1-88P-201ENST00000459274 128 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 COPS8P2-201ENST00000473228 627 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC009120.1-201ENST00000493458 473 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC108043.1-201ENST00000512696 574 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 SNORD116-30-201ENST00000516468 85 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC021678.3-201ENST00000517893 476 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AP001804.2-201ENST00000533932 910 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL121839.1-201ENST00000556233 1185 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 DPPA2P4-201ENST00000563717 878 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 IMMP1LP3-201ENST00000604197 224 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC116651.1-201ENST00000609724 556 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL352984.2-202ENST00000613699 155 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AP005212.4-201ENST00000614206 710 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 MIR6837-201ENST00000620884 64 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 CU639417.4-201ENST00000623928 207 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL390318.1-201ENST00000624564 687 ntBASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.82□□□□□ -1.48
HDDC3Q8N4P3 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC130304.1-201ENST00000622942 2385 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC235565.1-201ENST00000456962 1325 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 RN7SKP186-201ENST00000365371 303 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AL672167.2-201ENST00000377164 879 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 RNU6-171P-201ENST00000384354 107 ntBASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.81□□□□□ -1.48
HDDC3Q8N4P3 AC019205.1-201ENST00000421830 730 ntBASIC5.81□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms