Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC004817.4-201ENST00000602396 3625 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 SNORD1C-201ENST00000363315 78 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 SNORA68.2-201ENST00000391263 128 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AL512622.1-201ENST00000414106 481 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 USP24P1-201ENST00000433802 779 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC068228.1-201ENST00000461723 211 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 RN7SL515P-201ENST00000463999 297 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC008945.1-201ENST00000505144 499 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 HMGB1P42-201ENST00000532126 553 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC092332.1-201ENST00000563684 829 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC027229.1-201ENST00000583887 253 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 HMGB1P51-201ENST00000605166 638 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 BNIP3P7-201ENST00000605641 516 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AL021368.3-201ENST00000607119 578 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 AP001437.1-201ENST00000608783 456 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 MIR6071-201ENST00000616741 78 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 RFPL4AP6-201ENST00000616792 846 ntBASIC5.75□□□□□ -1.49
VMP1Q96GC9 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.75□□□□□ -1.49
VMP1Q96GC9 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
VMP1Q96GC9 AC022325.1-201ENST00000502748 2199 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 AC018717.1-201ENST00000457712 1505 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 SNORA21-201ENST00000362423 132 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 RNA5SP433-201ENST00000364491 114 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 CRP-204ENST00000368112 787 ntTSL 2 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL121878.1-201ENST00000418638 859 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 OR6K4P-201ENST00000423179 955 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 MTND2P2-201ENST00000434633 945 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 PNKDP1-201ENST00000435914 430 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 XKRYP6-201ENST00000440468 1116 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 XKRYP3-201ENST00000442113 1116 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AC079080.1-201ENST00000479841 822 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 PFN2-209ENST00000481275 560 ntTSL 4 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 PFN1P8-201ENST00000497012 543 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 IGHV3-63-201ENST00000518422 341 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 MIR3189-201ENST00000578735 73 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 NPIPB1P-202ENST00000588786 828 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 LINC01999-201ENST00000592917 646 ntTSL 2 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL499605.1-201ENST00000604628 403 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AC008555.7-201ENST00000605008 583 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AC092266.1-201ENST00000610958 165 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AL512652.1-201ENST00000619006 500 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 AP002967.1-201ENST00000624203 539 ntBASIC5.74□□□□□ -1.49
VMP1Q96GC9 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
VMP1Q96GC9 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC5.74□□□□□ -1.49
VMP1Q96GC9 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 70.7 ms