Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC88AQ3V6T2 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AC006206.1-201ENST00000544842 3387 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 OR2T12-202ENST00000641276 5708 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 MIR551A-201ENST00000385042 96 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AL365220.1-201ENST00000432923 399 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AC074255.1-201ENST00000511259 501 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AC090527.3-201ENST00000619041 548 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 AC092070.2-203ENST00000598377 3644 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 NBPF8-201ENST00000583271 5330 ntBASIC6.76□□□□□ -1.33
CCDC88AQ3V6T2 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 ZNF733P-202ENST00000444809 1573 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 SNORD56.6-201ENST00000384569 71 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AL590139.1-201ENST00000416267 400 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC092647.3-201ENST00000443044 633 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 RSU1P1-201ENST00000453416 441 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 PRELID3BP5-201ENST00000508612 460 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AL121594.2-201ENST00000541658 472 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC010435.1-201ENST00000623353 1177 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 HSPD1P7-201ENST00000447985 1686 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 IRF5P1-201ENST00000504852 2164 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 CTNNA2-202ENST00000361291 3071 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 SNORA67-201ENST00000384423 137 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 RPS26P38-201ENST00000414476 348 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 VN1R21P-201ENST00000426703 765 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 snoU13.20-201ENST00000459180 104 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 RPS7P6-201ENST00000485777 579 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 EIF3KP3-201ENST00000514461 639 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 ATP5J2P6-201ENST00000565203 266 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 DHFRP1-201ENST00000579682 559 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AP005403.1-201ENST00000579720 229 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC006115.2-201ENST00000596823 202 ntBASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC88AQ3V6T2 AC012618.3-205ENST00000637896 1496 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 RN7SKP113-201ENST00000363891 295 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 AL121977.1-201ENST00000401636 979 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 TMEM183AP1-205ENST00000432739 290 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 RN7SL447P-201ENST00000494711 245 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 MIR2117-201ENST00000516780 80 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 AC021006.3-201ENST00000530771 192 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 AC137627.1-201ENST00000545761 289 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 AL162431.4-201ENST00000604674 411 ntBASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
CCDC88AQ3V6T2 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms