Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL035661.1-201ENST00000620459 1144 ntBASIC7.14□□□□□ -1.27
LIG3P49916 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 AC092656.1-203ENST00000624134 423 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC090181.3-201ENST00000624777 1514 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AC026108.1-201ENST00000635444 547 ntBASIC7.14□□□□□ -1.27
LIG3P49916 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC7.14□□□□□ -1.27
LIG3P49916 MAPK10-357ENST00000641831 2858 ntBASIC7.14□□□□□ -1.27
LIG3P49916 KIF27-202ENST00000334204 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
LIG3P49916 MACROD2-203ENST00000402914 4425 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 PAPOLG-201ENST00000238714 4263 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 DDX18P6-201ENST00000450119 1997 ntBASIC7.13□□□□□ -1.27
LIG3P49916 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 TTC39DP-201ENST00000416781 1688 ntBASIC7.13□□□□□ -1.27
LIG3P49916 CR381670.1-201ENST00000624291 1693 ntBASIC7.13□□□□□ -1.27
LIG3P49916 ANKRD12-201ENST00000262126 11288 ntAPPRIS P3 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 DCSTAMP-208ENST00000622554 1471 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
LIG3P49916 LINC02197-201ENST00000502659 2767 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 IL31RA-202ENST00000354961 2658 ntAPPRIS ALT2 TSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 MGP-201ENST00000228938 694 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 OR4D11-201ENST00000313253 936 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
LIG3P49916 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 RN7SKP55-201ENST00000364888 307 ntBASIC7.13□□□□□ -1.27
LIG3P49916 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 FAM204BP-201ENST00000369171 701 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AL672167.2-201ENST00000377164 879 ntBASIC7.13□□□□□ -1.27
LIG3P49916 RNA5SP105-201ENST00000391123 113 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AL390774.1-201ENST00000411924 246 ntBASIC7.13□□□□□ -1.27
LIG3P49916 MEG8-201ENST00000414488 800 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 VDAC1P10-201ENST00000416715 891 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 AL445465.1-204ENST00000440220 447 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 AC027124.1-201ENST00000440852 466 ntBASIC7.13□□□□□ -1.27
LIG3P49916 MTCYBP3-201ENST00000445588 1137 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AC114752.1-201ENST00000448204 289 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 MED28P7-201ENST00000456611 530 ntBASIC7.13□□□□□ -1.27
LIG3P49916 RPS14P8-201ENST00000478778 369 ntBASIC7.13□□□□□ -1.27
LIG3P49916 RPL17P2-201ENST00000491913 451 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 AC022441.2-201ENST00000514113 382 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 AC027309.1-201ENST00000519976 528 ntTSL 4 BASIC7.13□□□□□ -1.27
LIG3P49916 OXR1-212ENST00000521592 993 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 ACRV1-203ENST00000530048 794 ntAPPRIS ALT2 TSL 3 BASIC7.13□□□□□ -1.27
LIG3P49916 AC022880.1-201ENST00000534017 973 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AP000619.3-201ENST00000535634 1127 ntBASIC7.13□□□□□ -1.27
LIG3P49916 NOP10-202ENST00000557912 436 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 ZNF415P1-201ENST00000582279 1166 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AC096553.1-201ENST00000605169 829 ntBASIC7.13□□□□□ -1.27
LIG3P49916 Metazoa_SRP.195-201ENST00000612667 287 ntBASIC7.13□□□□□ -1.27
LIG3P49916 GBA3-207ENST00000613293 1233 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 AC245407.2-201ENST00000614199 451 ntBASIC7.13□□□□□ -1.27
LIG3P49916 WT1-AS_8.1-201ENST00000615200 275 ntBASIC7.13□□□□□ -1.27
LIG3P49916 RBM12B-AS1-201ENST00000623283 653 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AC087894.3-201ENST00000623682 349 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AL359740.1-201ENST00000624340 592 ntBASIC7.13□□□□□ -1.27
LIG3P49916 CYP2C8-213ENST00000628935 924 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 TEX41-279ENST00000629149 609 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 AC006453.3-201ENST00000635891 377 ntBASIC7.13□□□□□ -1.27
LIG3P49916 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 AC090582.1-201ENST00000636321 199 ntBASIC7.13□□□□□ -1.27
LIG3P49916 OR7E91P-202ENST00000642062 1198 ntBASIC7.13□□□□□ -1.27
LIG3P49916 NPHP1-201ENST00000316534 3756 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 ZNF761-202ENST00000432094 4061 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 FBXO7-202ENST00000397426 1888 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 NBPF9-206ENST00000613969 4624 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
LIG3P49916 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
LIG3P49916 AMY1B-202ENST00000370080 1787 ntAPPRIS P1 TSL 2 BASIC7.13□□□□□ -1.27
LIG3P49916 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 RGS13-201ENST00000391995 1505 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC7.12□□□□□ -1.27
LIG3P49916 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC7.12□□□□□ -1.27
LIG3P49916 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms