Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 MFSD8-239ENST00000641590 2479 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 RNA5SP211-201ENST00000365516 117 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 FETUB-203ENST00000382136 1040 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 OR7E101P-201ENST00000400428 513 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AL096711.1-201ENST00000404780 554 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 SNRPEP6-201ENST00000407465 277 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 MIR1203-201ENST00000408812 85 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 ICA1L-210ENST00000425178 879 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC022022.1-201ENST00000430304 178 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 HNRNPA1P18-201ENST00000433537 927 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AL731534.1-201ENST00000434711 269 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 MAPRE1P3-201ENST00000435438 796 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AP000936.3-201ENST00000438127 255 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 OR2A1-AS1-202ENST00000467944 422 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AL355032.1-201ENST00000472981 438 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 RN7SL809P-201ENST00000482040 297 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 ENSA-211ENST00000503345 793 ntTSL 3 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC108941.2-201ENST00000506796 716 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 snoU109.6-201ENST00000516831 118 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AP004609.2-201ENST00000532177 190 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC060766.1-201ENST00000590824 627 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC084036.1-201ENST00000609190 508 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC244131.2-201ENST00000612592 512 ntTSL 3 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 CCL14-204ENST00000622526 472 ntTSL 3 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AL162377.2-201ENST00000624532 337 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 PDZK1P1-202ENST00000425209 1350 ntBASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 OR52N1-202ENST00000641645 2545 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CHMP4AQ9BY43 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 SNORD1C-201ENST00000363315 78 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 EI24P3-201ENST00000399046 1062 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AL121835.1-201ENST00000404250 354 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 RFESDP1-201ENST00000422350 461 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AC007064.3-201ENST00000422608 359 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AC093716.1-201ENST00000435923 377 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 KARSP1-201ENST00000451871 1752 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 EIF4A2P4-201ENST00000458691 1196 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AC011476.1-201ENST00000466725 307 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 RN7SL188P-201ENST00000469842 285 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AL035690.1-201ENST00000490892 383 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 PSG10P-201ENST00000501199 1500 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 RNA5SP438-201ENST00000516561 112 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 TRAV11-201ENST00000539512 339 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 ZNF322P1-201ENST00000568013 1209 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 BNIP3P7-201ENST00000605641 516 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 AL356274.1-201ENST00000617064 410 ntBASIC7.65□□□□□ -1.18
CHMP4AQ9BY43 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
CHMP4AQ9BY43 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
CHMP4AQ9BY43 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.19
CHMP4AQ9BY43 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC7.65□□□□□ -1.19
CHMP4AQ9BY43 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 PEX12P1-201ENST00000400284 1048 ntBASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 LINC01760-201ENST00000423410 382 ntTSL 2 BASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 AL390879.1-201ENST00000439143 386 ntBASIC7.64□□□□□ -1.19
CHMP4AQ9BY43 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC7.64□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms