Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RNA5SP122-201ENST00000384457 108 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 MIR130A-201ENST00000385274 89 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 RNU6-233P-201ENST00000410845 141 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 RMRPP5-201ENST00000411156 267 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC5.53□□□□□ -1.52
SHMT2P34897 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.53□□□□□ -1.52
SHMT2P34897 AC113412.1-201ENST00000425840 504 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 NPM1P18-201ENST00000434232 732 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 GAPDHP48-201ENST00000436626 961 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 SUMO2P3-201ENST00000438311 288 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 AC114982.2-201ENST00000461396 358 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 RPSAP51-201ENST00000497462 645 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AC104109.1-201ENST00000498563 436 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 SNORA43.3-201ENST00000517240 103 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 TMEM97P2-201ENST00000517841 403 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 MRPS16P1-201ENST00000523462 412 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.53□□□□□ -1.52
SHMT2P34897 AC135626.1-201ENST00000556983 435 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.53□□□□□ -1.52
SHMT2P34897 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.53□□□□□ -1.52
SHMT2P34897 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 AC063977.5-201ENST00000601044 974 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AL139041.1-201ENST00000605480 610 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AC015712.7-201ENST00000615211 635 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AC126175.1-201ENST00000617041 758 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.53□□□□□ -1.52
SHMT2P34897 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.53□□□□□ -1.52
SHMT2P34897 AL512356.3-201ENST00000623005 461 ntBASIC5.53□□□□□ -1.52
SHMT2P34897 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC5.53□□□□□ -1.52
SHMT2P34897 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.53□□□□□ -1.52
SHMT2P34897 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SHMT2P34897 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SHMT2P34897 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 Z95114.1-201ENST00000624264 14574 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 AL449283.1-201ENST00000602631 3403 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 AL158152.1-201ENST00000602652 1435 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 RNA5SP30-201ENST00000365552 115 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SHMT2P34897 RNA5SP91-201ENST00000390902 119 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.52□□□□□ -1.53
SHMT2P34897 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 RNGTTP1-201ENST00000420965 728 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 Z84478.1-201ENST00000438230 1219 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 RPL5P25-201ENST00000441148 775 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 AC005297.1-201ENST00000444765 862 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 AL358876.1-201ENST00000453364 1075 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 AC090602.1-201ENST00000469695 252 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 PDCL3P4-201ENST00000489621 720 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 DUTP1-201ENST00000493631 470 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.52□□□□□ -1.53
SHMT2P34897 IGLVIV-64-201ENST00000518581 301 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 IGKV3D-34-201ENST00000522638 302 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.52□□□□□ -1.53
SHMT2P34897 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.52□□□□□ -1.53
SHMT2P34897 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.52□□□□□ -1.53
SHMT2P34897 PWRN1-206ENST00000565512 433 ntTSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 HIRAP1-201ENST00000605318 787 ntBASIC5.52□□□□□ -1.53
SHMT2P34897 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
SHMT2P34897 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SHMT2P34897 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.52□□□□□ -1.53
SHMT2P34897 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 EEF1A1P30-201ENST00000429708 1315 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
SHMT2P34897 RN7SKP145-201ENST00000363291 303 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SHMT2P34897 BMS1P17-202ENST00000416720 316 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.51□□□□□ -1.53
SHMT2P34897 AL662874.1-201ENST00000426065 230 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 VTI1BP4-201ENST00000427516 527 ntBASIC5.51□□□□□ -1.53
SHMT2P34897 AC002504.1-201ENST00000438281 691 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms