Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
SHROOM4Q9ULL8 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 RPS3AP41-201ENST00000462701 778 ntBASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 RN7SL51P-201ENST00000468230 285 ntBASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 AC006463.2-201ENST00000473326 348 ntBASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 KLRD1-209ENST00000543420 802 ntTSL 5 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC10.69□□□□□ -0.7
SHROOM4Q9ULL8 SSX3-202ENST00000376893 800 ntTSL 2 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 RNU6-167P-201ENST00000384292 106 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 RNU1-77P-201ENST00000390868 162 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AL360081.1-201ENST00000428299 555 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC091390.1-201ENST00000433904 331 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AL356981.1-201ENST00000454879 684 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 SLC25A51P1-201ENST00000468432 871 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 NMNAT1P5-201ENST00000559657 841 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 OR6D1P-201ENST00000436165 939 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 VN1R96P-201ENST00000446052 858 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC092324.1-201ENST00000468671 324 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 PCNPP1-201ENST00000552501 511 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AL512310.9-201ENST00000553311 948 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 MIR4480-201ENST00000582492 71 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AP001542.1-201ENST00000591314 200 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 AC132068.1-201ENST00000623805 459 ntBASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC10.68□□□□□ -0.7
SHROOM4Q9ULL8 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 MIR133B-201ENST00000362210 119 ntBASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AC074255.1-201ENST00000511259 501 ntBASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AC013644.1-201ENST00000523724 555 ntTSL 4 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 OR5AZ1P-201ENST00000527448 943 ntBASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 AP002505.2-201ENST00000623585 696 ntBASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 MIR7641-1-201ENST00000627518 61 ntBASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC10.67□□□□□ -0.7
SHROOM4Q9ULL8 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 PWAR1-201ENST00000624188 2414 ntBASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 HSPD1P8-201ENST00000400121 1658 ntBASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC10.66□□□□□ -0.7
SHROOM4Q9ULL8 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC10.66□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms