Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC006335.2-201ENST00000437993 330 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AL390119.1-201ENST00000440329 312 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 MRPS21P7-201ENST00000566937 238 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 NANOGP3-201ENST00000605855 286 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC079395.2-201ENST00000610982 737 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 U1.25-201ENST00000614085 162 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 MIR6826-201ENST00000617808 98 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 U1.34-201ENST00000618578 162 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 U1.31-201ENST00000620022 160 ntBASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 CGA-206ENST00000630630 832 ntTSL 2 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 UBA3-213ENST00000631029 123 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 IPO5-229ENST00000631030 192 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.05□□□□□ -1.6
CLCF1Q9UBD9 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 ZNF101P1-201ENST00000435701 1720 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 RNA5SP91-201ENST00000390902 119 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 RPS6P23-201ENST00000413224 722 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 SMC4P1-201ENST00000414479 527 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 CYCSP51-201ENST00000443545 318 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 VDAC2P4-201ENST00000452925 711 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 RSU1P1-201ENST00000453416 441 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 MEMO1P4-201ENST00000453590 386 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AP000547.1-201ENST00000454360 617 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 EIF3LP3-201ENST00000495197 822 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AC108693.1-201ENST00000496068 432 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 IGKV2-18-201ENST00000522607 343 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AC015720.2-201ENST00000567709 334 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 MIR4489-201ENST00000578869 62 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AP000864.1-201ENST00000609424 650 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 AL031595.2-201ENST00000624215 19071 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 OR4G1P-202ENST00000641173 1788 ntBASIC5.04□□□□□ -1.6
CLCF1Q9UBD9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.03□□□□□ -1.6
CLCF1Q9UBD9 RNA5SP234-201ENST00000363916 119 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 141.5 ms