Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 NLRP3P1-201ENST00000622303 1785 ntBASIC5.31□□□□□ -1.56
LIM2P55344 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.31□□□□□ -1.56
LIM2P55344 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.31□□□□□ -1.56
LIM2P55344 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
LIM2P55344 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 AC068870.1-201ENST00000563737 2455 ntBASIC5.31□□□□□ -1.56
LIM2P55344 AC114786.1-201ENST00000512892 1415 ntBASIC5.31□□□□□ -1.56
LIM2P55344 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.56
LIM2P55344 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIM2P55344 LINC02019-201ENST00000608605 2060 ntBASIC5.3□□□□□ -1.56
LIM2P55344 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIM2P55344 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIM2P55344 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 BMS1P17-202ENST00000416720 316 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.3□□□□□ -1.56
LIM2P55344 AL354766.1-201ENST00000423396 542 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.3□□□□□ -1.56
LIM2P55344 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.3□□□□□ -1.56
LIM2P55344 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 LDHAP2-201ENST00000437325 985 ntBASIC5.3□□□□□ -1.56
LIM2P55344 RPL12P11-201ENST00000439970 501 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AL161636.2-201ENST00000445179 927 ntBASIC5.3□□□□□ -1.56
LIM2P55344 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.3□□□□□ -1.56
LIM2P55344 AL596266.1-201ENST00000448132 400 ntBASIC5.3□□□□□ -1.56
LIM2P55344 NXT1P1-201ENST00000458481 316 ntBASIC5.3□□□□□ -1.56
LIM2P55344 SNORD125-201ENST00000459538 96 ntBASIC5.3□□□□□ -1.56
LIM2P55344 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.3□□□□□ -1.56
LIM2P55344 RN7SL197P-201ENST00000466981 299 ntBASIC5.3□□□□□ -1.56
LIM2P55344 ATP5LP5-201ENST00000483050 299 ntBASIC5.3□□□□□ -1.56
LIM2P55344 PPIAP19-201ENST00000486414 492 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.3□□□□□ -1.56
LIM2P55344 RPS17P5-201ENST00000498293 408 ntBASIC5.3□□□□□ -1.56
LIM2P55344 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.3□□□□□ -1.56
LIM2P55344 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 MTATP6P1-201ENST00000514057 681 ntBASIC5.3□□□□□ -1.56
LIM2P55344 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.3□□□□□ -1.56
LIM2P55344 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.3□□□□□ -1.56
LIM2P55344 AL049872.1-201ENST00000556323 322 ntBASIC5.3□□□□□ -1.56
LIM2P55344 MIR4310-201ENST00000582950 57 ntBASIC5.3□□□□□ -1.56
LIM2P55344 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.3□□□□□ -1.56
LIM2P55344 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.3□□□□□ -1.56
LIM2P55344 AC015849.6-201ENST00000605454 474 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AL354950.1-201ENST00000614150 568 ntBASIC5.3□□□□□ -1.56
LIM2P55344 AC008115.3-201ENST00000614874 549 ntBASIC5.3□□□□□ -1.56
LIM2P55344 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.3□□□□□ -1.56
LIM2P55344 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.3□□□□□ -1.56
LIM2P55344 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIM2P55344 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
LIM2P55344 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
LIM2P55344 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 OR4F13P-202ENST00000560066 2054 ntBASIC5.3□□□□□ -1.56
LIM2P55344 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.3□□□□□ -1.56
LIM2P55344 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
LIM2P55344 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LIM2P55344 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LIM2P55344 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.29□□□□□ -1.56
LIM2P55344 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
LIM2P55344 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.29□□□□□ -1.56
LIM2P55344 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.29□□□□□ -1.56
LIM2P55344 RNA5SP122-201ENST00000384457 108 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AL009179.1-201ENST00000406085 265 ntBASIC5.29□□□□□ -1.56
LIM2P55344 GAPDHP42-201ENST00000406848 981 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.29□□□□□ -1.56
LIM2P55344 AL596448.1-201ENST00000415024 392 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.29□□□□□ -1.56
LIM2P55344 AL133173.1-201ENST00000423458 397 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC104843.2-201ENST00000427666 297 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.29□□□□□ -1.56
LIM2P55344 FMO7P-201ENST00000436045 768 ntBASIC5.29□□□□□ -1.56
LIM2P55344 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 AC023271.1-201ENST00000445936 1090 ntBASIC5.29□□□□□ -1.56
LIM2P55344 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
LIM2P55344 RN7SL72P-201ENST00000460697 269 ntBASIC5.29□□□□□ -1.56
LIM2P55344 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LIM2P55344 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.29□□□□□ -1.56
LIM2P55344 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
LIM2P55344 UGT2A3P7-201ENST00000510485 734 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC022616.2-201ENST00000523185 300 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.29□□□□□ -1.56
LIM2P55344 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.29□□□□□ -1.56
LIM2P55344 MRPS21P7-201ENST00000566937 238 ntBASIC5.29□□□□□ -1.56
LIM2P55344 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.29□□□□□ -1.56
LIM2P55344 MIR4505-201ENST00000582238 73 ntBASIC5.29□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms