Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 LYPLA1P3-201ENST00000402650 695 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 OR6D1P-201ENST00000436165 939 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 AC090804.1-201ENST00000448870 490 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
FOXA1P55317 SELENOT-204ENST00000480740 783 ntTSL 3 BASIC5.3□□□□□ -1.56
FOXA1P55317 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 RNU6-615P-201ENST00000516065 106 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.3□□□□□ -1.56
FOXA1P55317 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.3□□□□□ -1.56
FOXA1P55317 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 AC129915.3-201ENST00000634128 948 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.3□□□□□ -1.56
FOXA1P55317 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
FOXA1P55317 Z83820.1-201ENST00000456978 1499 ntBASIC5.3□□□□□ -1.56
FOXA1P55317 RBM44-206ENST00000611254 1427 ntTSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.3□□□□□ -1.56
FOXA1P55317 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
FOXA1P55317 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 PMS2-203ENST00000382321 1386 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
FOXA1P55317 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.29□□□□□ -1.56
FOXA1P55317 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.29□□□□□ -1.56
FOXA1P55317 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
FOXA1P55317 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
FOXA1P55317 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
FOXA1P55317 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
FOXA1P55317 MIR375-201ENST00000362103 64 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 RNA5SP433-201ENST00000364491 114 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 RNA5SP241-201ENST00000391326 114 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 OR7E156P-201ENST00000400303 464 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 VTI1BP4-201ENST00000427516 527 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 FGF12-202ENST00000430714 603 ntTSL 2 BASIC5.29□□□□□ -1.56
FOXA1P55317 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.29□□□□□ -1.56
FOXA1P55317 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.29□□□□□ -1.56
FOXA1P55317 AL035090.1-201ENST00000454835 332 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 AC011476.1-201ENST00000466725 307 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 RN7SL170P-201ENST00000487098 295 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 RN7SL649P-201ENST00000496974 275 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.29□□□□□ -1.56
FOXA1P55317 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.29□□□□□ -1.56
FOXA1P55317 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.29□□□□□ -1.56
FOXA1P55317 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.29□□□□□ -1.56
FOXA1P55317 AL356608.1-201ENST00000610034 820 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 AC025262.3-201ENST00000623666 360 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 AC073593.1-201ENST00000624500 411 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 Z95114.1-201ENST00000624264 14574 ntBASIC5.29□□□□□ -1.56
FOXA1P55317 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
FOXA1P55317 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 AC002525.1-201ENST00000624392 1622 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
FOXA1P55317 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 OR52B3P-201ENST00000314715 928 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 OR51J1-201ENST00000332043 951 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
FOXA1P55317 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.28□□□□□ -1.56
FOXA1P55317 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 AC107977.1-201ENST00000355745 939 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.28□□□□□ -1.56
FOXA1P55317 SNORA16A-201ENST00000384342 137 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
FOXA1P55317 NME1P1-201ENST00000420914 382 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
FOXA1P55317 AC113412.1-201ENST00000425840 504 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AL662874.1-201ENST00000426065 230 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AL136231.1-201ENST00000429407 730 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 RPL7AP49-201ENST00000429522 581 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 KATNBL1P2-201ENST00000433311 835 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AL591438.1-201ENST00000433508 581 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AC092106.1-201ENST00000444291 373 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AC005297.1-201ENST00000444765 862 ntBASIC5.28□□□□□ -1.56
FOXA1P55317 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.28□□□□□ -1.56
FOXA1P55317 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 141.2 ms