Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 RN7SKP185-201ENST00000362813 326 ntBASIC6.36□□□□□ -1.39
COPB1P53618 RNU1-136P-201ENST00000384181 164 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC6.36□□□□□ -1.39
COPB1P53618 VN1R21P-201ENST00000426703 765 ntBASIC6.36□□□□□ -1.39
COPB1P53618 KCTD9P1-201ENST00000430462 1167 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC108479.1-201ENST00000431142 427 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 AC138761.5-201ENST00000433967 325 ntBASIC6.36□□□□□ -1.39
COPB1P53618 GAPDHP59-201ENST00000435908 267 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC6.36□□□□□ -1.39
COPB1P53618 ZNF736P6Y-201ENST00000447526 1213 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 MTND6P32-201ENST00000457611 483 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC108103.1-201ENST00000511286 446 ntBASIC6.36□□□□□ -1.39
COPB1P53618 GAPDHP62-201ENST00000515313 990 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.36□□□□□ -1.39
COPB1P53618 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COPB1P53618 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COPB1P53618 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COPB1P53618 AC084824.2-201ENST00000548906 345 ntBASIC6.36□□□□□ -1.39
COPB1P53618 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COPB1P53618 DPPA3P2-202ENST00000557188 1219 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AL158211.1-201ENST00000566763 763 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COPB1P53618 MIR4760-201ENST00000585040 80 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 AL499605.1-201ENST00000604628 403 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.36□□□□□ -1.39
COPB1P53618 Metazoa_SRP.35-201ENST00000611402 288 ntBASIC6.36□□□□□ -1.39
COPB1P53618 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC6.36□□□□□ -1.39
COPB1P53618 FAM27E2-201ENST00000619668 403 ntBASIC6.36□□□□□ -1.39
COPB1P53618 AL035661.1-201ENST00000620459 1144 ntBASIC6.36□□□□□ -1.39
COPB1P53618 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COPB1P53618 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COPB1P53618 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC6.36□□□□□ -1.39
COPB1P53618 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC6.36□□□□□ -1.39
COPB1P53618 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC6.35□□□□□ -1.39
COPB1P53618 CACNB4-203ENST00000397327 2112 ntTSL 5 BASIC6.35□□□□□ -1.39
COPB1P53618 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COPB1P53618 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.35□□□□□ -1.39
COPB1P53618 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
COPB1P53618 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 MIR7-1-201ENST00000384871 110 ntBASIC6.35□□□□□ -1.39
COPB1P53618 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COPB1P53618 AC092642.1-201ENST00000392417 425 ntBASIC6.35□□□□□ -1.39
COPB1P53618 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 NME1P1-201ENST00000420914 382 ntBASIC6.35□□□□□ -1.39
COPB1P53618 RNGTTP1-201ENST00000420965 728 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 GAPDHP75-201ENST00000433910 943 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AL691517.1-201ENST00000440833 1235 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 HGF-207ENST00000453018 721 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 PPP1R11P1-201ENST00000486095 376 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AL158068.1-201ENST00000506116 616 ntBASIC6.35□□□□□ -1.39
COPB1P53618 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC6.35□□□□□ -1.39
COPB1P53618 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 IGKV2-4-201ENST00000523070 340 ntBASIC6.35□□□□□ -1.39
COPB1P53618 BMPR1APS2-201ENST00000527904 1012 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC6.35□□□□□ -1.39
COPB1P53618 AC091078.2-201ENST00000557145 559 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.35□□□□□ -1.39
COPB1P53618 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC6.35□□□□□ -1.39
COPB1P53618 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC6.35□□□□□ -1.39
COPB1P53618 AL139099.4-201ENST00000614802 114 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AL136228.1-201ENST00000622221 319 ntBASIC6.35□□□□□ -1.39
COPB1P53618 AC097372.4-201ENST00000625025 466 ntBASIC6.35□□□□□ -1.39
COPB1P53618 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC6.35□□□□□ -1.39
COPB1P53618 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.35□□□□□ -1.39
COPB1P53618 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COPB1P53618 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COPB1P53618 AC123769.1-201ENST00000530992 3192 ntBASIC6.34□□□□□ -1.39
COPB1P53618 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC6.34□□□□□ -1.39
COPB1P53618 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.34□□□□□ -1.39
COPB1P53618 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.34□□□□□ -1.39
COPB1P53618 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC6.34□□□□□ -1.39
COPB1P53618 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC6.34□□□□□ -1.39
COPB1P53618 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.34□□□□□ -1.39
COPB1P53618 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COPB1P53618 CFAP97-201ENST00000296775 903 ntTSL 5 BASIC6.34□□□□□ -1.39
COPB1P53618 OR1D2-201ENST00000331459 939 ntAPPRIS P1 BASIC6.34□□□□□ -1.39
COPB1P53618 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COPB1P53618 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 91.9 ms