Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 RPL7L1P3-201ENST00000455249 689 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 RPL7P45-201ENST00000455851 743 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 RNU6-964P-201ENST00000516524 69 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AC087360.1-201ENST00000518788 616 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 AL118522.2-201ENST00000616045 615 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 WBP1LP8-201ENST00000617401 327 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 FBXL17-203ENST00000496714 3773 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 ZNF733P-202ENST00000444809 1573 ntBASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 ZNF585B-205ENST00000532828 6210 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
SHROOM4Q9ULL8 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC10.77□□□□□ -0.68
SHROOM4Q9ULL8 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC10.77□□□□□ -0.68
SHROOM4Q9ULL8 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.68
SHROOM4Q9ULL8 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 NOX4-214ENST00000532825 2039 ntTSL 2 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 RPS6P23-201ENST00000413224 722 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 NIFKP3-201ENST00000417799 865 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 RPS17P17-201ENST00000419392 409 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 AC093267.1-201ENST00000489176 961 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 AC109462.1-201ENST00000491087 368 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 RN7SL591P-201ENST00000496150 292 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 PRELID3BP5-201ENST00000508612 460 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 AC113349.1-201ENST00000512105 583 ntTSL 4 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 AC022164.1-201ENST00000568767 2673 ntBASIC10.77□□□□□ -0.69
SHROOM4Q9ULL8 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AL161912.4-201ENST00000623889 2468 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 RNA5SP335-201ENST00000363817 110 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AL355994.1-201ENST00000424379 260 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AC083982.1-201ENST00000485679 344 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 DUTP1-201ENST00000493631 470 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AC006116.3-201ENST00000592968 361 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AC234771.5-201ENST00000600161 514 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AC009163.6-201ENST00000612367 342 ntBASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 AL158064.2-205ENST00000640346 4082 ntTSL 5 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC10.76□□□□□ -0.69
SHROOM4Q9ULL8 PANDAR-201ENST00000629595 1506 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC137056.2-201ENST00000624055 1958 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 RPL23P2-201ENST00000320371 421 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 PPP1R42-201ENST00000324682 1084 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC006335.2-201ENST00000437993 330 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 RN7SL570P-201ENST00000484405 292 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 RN7SL447P-201ENST00000494711 245 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 RNU6ATAC24P-201ENST00000516811 135 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 OTX2-AS1-201ENST00000534909 2428 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 ABCA11P-202ENST00000504019 2110 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC005224.3-201ENST00000584683 2140 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 TEK-202ENST00000406359 3935 ntTSL 2 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 AC011933.2-201ENST00000578539 2790 ntBASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC10.75□□□□□ -0.69
SHROOM4Q9ULL8 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AC016397.1-201ENST00000412463 242 ntBASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC10.74□□□□□ -0.69
SHROOM4Q9ULL8 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC10.74□□□□□ -0.69
Retrieved 100 of 98,524 protein–RNA pairs in 83.2 ms