Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL359839.1-201ENST00000451975 1160 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AC108751.3-201ENST00000461814 1020 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AC005165.2-201ENST00000466070 380 ntBASIC5.34□□□□□ -1.55
SDC1P18827 RPS3AP15-201ENST00000483874 781 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC5.34□□□□□ -1.55
SDC1P18827 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.34□□□□□ -1.55
SDC1P18827 AC069208.1-201ENST00000540811 676 ntTSL 4 BASIC5.34□□□□□ -1.55
SDC1P18827 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.34□□□□□ -1.55
SDC1P18827 DPPA2P4-201ENST00000563717 878 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.34□□□□□ -1.55
SDC1P18827 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.34□□□□□ -1.55
SDC1P18827 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.34□□□□□ -1.55
SDC1P18827 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 AC009237.13-201ENST00000603193 276 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AC010632.3-201ENST00000611377 369 ntBASIC5.34□□□□□ -1.55
SDC1P18827 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.34□□□□□ -1.55
SDC1P18827 OR8G3P-202ENST00000641572 1255 ntBASIC5.34□□□□□ -1.55
SDC1P18827 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.34□□□□□ -1.55
SDC1P18827 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5.34□□□□□ -1.55
SDC1P18827 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
SDC1P18827 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.34□□□□□ -1.56
SDC1P18827 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
SDC1P18827 ABCC13-202ENST00000463099 3842 ntBASIC5.34□□□□□ -1.56
SDC1P18827 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.34□□□□□ -1.56
SDC1P18827 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.33□□□□□ -1.56
SDC1P18827 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.33□□□□□ -1.56
SDC1P18827 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 AC144833.1-201ENST00000567953 4089 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC092681.1-201ENST00000297369 291 ntBASIC5.33□□□□□ -1.56
SDC1P18827 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SDC1P18827 OR7E101P-201ENST00000400428 513 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.33□□□□□ -1.56
SDC1P18827 RPSAP35-201ENST00000413753 818 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AL035660.1-201ENST00000422041 222 ntBASIC5.33□□□□□ -1.56
SDC1P18827 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 RIMKLBP2-201ENST00000424737 654 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC127526.2-201ENST00000426436 775 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AL022331.1-201ENST00000429025 477 ntBASIC5.33□□□□□ -1.56
SDC1P18827 HMGB3P24-201ENST00000433260 622 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC5.33□□□□□ -1.56
SDC1P18827 AC013410.1-201ENST00000436223 1232 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AL512637.1-201ENST00000439523 1231 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC073465.2-201ENST00000440938 498 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.33□□□□□ -1.56
SDC1P18827 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.33□□□□□ -1.56
SDC1P18827 AZGP1P2-201ENST00000454506 345 ntBASIC5.33□□□□□ -1.56
SDC1P18827 CTSLP6-201ENST00000458273 1002 ntBASIC5.33□□□□□ -1.56
SDC1P18827 RPS23P6-201ENST00000466136 431 ntBASIC5.33□□□□□ -1.56
SDC1P18827 RN7SL188P-201ENST00000469842 285 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC105420.1-201ENST00000504389 582 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC026782.2-201ENST00000510845 636 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.33□□□□□ -1.56
SDC1P18827 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC5.33□□□□□ -1.56
SDC1P18827 AC015802.2-201ENST00000589690 189 ntBASIC5.33□□□□□ -1.56
SDC1P18827 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.33□□□□□ -1.56
SDC1P18827 AL049840.6-201ENST00000604583 345 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AL162574.1-201ENST00000615702 950 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AC129778.1-202ENST00000623812 261 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AL591379.1-207ENST00000635982 261 ntBASIC5.33□□□□□ -1.56
SDC1P18827 AMYH02020865.1-205ENST00000636189 261 ntBASIC5.33□□□□□ -1.56
SDC1P18827 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
SDC1P18827 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.33□□□□□ -1.56
SDC1P18827 AL359715.3-201ENST00000569267 2123 ntBASIC5.33□□□□□ -1.56
SDC1P18827 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
SDC1P18827 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
SDC1P18827 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
SDC1P18827 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 IFIT1P1-201ENST00000400497 1449 ntBASIC5.32□□□□□ -1.56
SDC1P18827 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SDC1P18827 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.32□□□□□ -1.56
SDC1P18827 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SDC1P18827 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.32□□□□□ -1.56
SDC1P18827 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
SDC1P18827 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.32□□□□□ -1.56
SDC1P18827 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SDC1P18827 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SDC1P18827 AC009506.2-201ENST00000420635 840 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AC066692.1-201ENST00000421721 457 ntBASIC5.32□□□□□ -1.56
SDC1P18827 RPL7P56-201ENST00000429441 717 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 AC110602.1-201ENST00000437414 318 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AC006335.2-201ENST00000437993 330 ntBASIC5.32□□□□□ -1.56
SDC1P18827 IGBP1P3-201ENST00000447449 1000 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.32□□□□□ -1.56
SDC1P18827 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 AC021106.1-201ENST00000509020 1058 ntBASIC5.32□□□□□ -1.56
SDC1P18827 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.32□□□□□ -1.56
SDC1P18827 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms