Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC093809.1-201ENST00000509155 340 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 GUSBP3-201ENST00000509348 423 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 snoU109.5-201ENST00000516231 132 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 RNU6-406P-201ENST00000516470 107 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 Y_RNA.711-201ENST00000516993 102 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 C8orf37-AS1-201ENST00000517437 456 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 PATE4-203ENST00000534411 897 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC015722.1-201ENST00000557499 385 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 RN7SL66P-201ENST00000582099 264 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC040963.1-201ENST00000591900 564 ntTSL 4 BASIC6.84□□□□□ -1.31
COL8A1P27658 AP001542.2-201ENST00000593141 364 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC005070.2-201ENST00000604391 260 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC090527.3-201ENST00000619041 548 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC6.84□□□□□ -1.31
COL8A1P27658 METAP1-212ENST00000625963 147 ntTSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC6.84□□□□□ -1.31
COL8A1P27658 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 AL118496.1-201ENST00000440201 1812 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 AP001528.3-201ENST00000624364 3249 ntBASIC6.84□□□□□ -1.31
COL8A1P27658 SLC11A2-201ENST00000262051 3986 ntAPPRIS ALT1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 ZNF33A-208ENST00000628825 2854 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 PPP2R3A-205ENST00000490467 1782 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 AL161756.1-201ENST00000555861 1751 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 BTN2A1-203ENST00000429381 3113 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 NUDT4-206ENST00000549992 3607 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 MET-204ENST00000436117 2295 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 AC079061.1-201ENST00000499579 3075 ntTSL 2 BASIC6.84□□□□□ -1.31
COL8A1P27658 RIF1-205ENST00000444746 7897 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
COL8A1P27658 GPBP1L1-201ENST00000290795 3599 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 DCAF8-203ENST00000368074 3824 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.31
COL8A1P27658 POT1-201ENST00000357628 4080 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.32
COL8A1P27658 ZNF708-201ENST00000356929 4004 ntAPPRIS P1 TSL 2 BASIC6.84□□□□□ -1.32
COL8A1P27658 AC114786.1-201ENST00000512892 1415 ntBASIC6.84□□□□□ -1.32
COL8A1P27658 ZNF383-208ENST00000590503 1673 ntAPPRIS P1 TSL 5 BASIC6.84□□□□□ -1.32
COL8A1P27658 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.32
COL8A1P27658 ARPP21-203ENST00000396482 2416 ntTSL 2 BASIC6.84□□□□□ -1.32
COL8A1P27658 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.84□□□□□ -1.32
COL8A1P27658 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC6.83□□□□□ -1.32
COL8A1P27658 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 DOCK5-201ENST00000276440 10075 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 ADCY10P1-203ENST00000567255 4569 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 PLPPR1-202ENST00000395056 2318 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 AC009053.1-202ENST00000563377 2051 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AL445231.1-201ENST00000445523 1814 ntTSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 ARMCX5-GPRASP2-206ENST00000476910 1848 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC127459.1-201ENST00000563129 2768 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 CTNND1-215ENST00000526938 3489 ntTSL 5 BASIC6.83□□□□□ -1.32
COL8A1P27658 SLC17A2-202ENST00000360488 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 AL591848.3-201ENST00000570141 2968 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 ZMYM2-202ENST00000382871 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 MIR365B-201ENST00000362317 111 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RNU6-1085P-201ENST00000363576 107 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RN7SKP118-201ENST00000364331 330 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RN7SKP48-201ENST00000365031 328 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 ST3GAL3-212ENST00000372362 468 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 RNU6-639P-201ENST00000384074 107 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 ATP5J-206ENST00000400099 492 ntTSL 5 BASIC6.83□□□□□ -1.32
COL8A1P27658 AL122016.1-201ENST00000403365 367 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RNU2-3P-201ENST00000410144 191 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RN7SKP140-201ENST00000411196 284 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC019130.1-201ENST00000413841 391 ntTSL 2 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC092042.2-201ENST00000417304 331 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 EEF1A1P34-201ENST00000419888 1267 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 BRWD1-AS1-201ENST00000423274 691 ntTSL 4 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC024082.2-201ENST00000434771 238 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 SNRPEP4-201ENST00000435815 279 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AL157414.2-201ENST00000442780 377 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 FO393419.1-201ENST00000443746 355 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AL161937.1-201ENST00000444478 425 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 AL445307.1-201ENST00000446476 602 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 AL161937.1-202ENST00000451960 341 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 NBPF2P-201ENST00000453025 661 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RPS20P20-201ENST00000460498 340 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RN7SL19P-201ENST00000462522 306 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RN7SL168P-201ENST00000463821 279 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RPL7P19-201ENST00000469948 618 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC096741.1-201ENST00000472250 846 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AL122013.1-201ENST00000473054 801 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC025271.1-201ENST00000485045 429 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 APOBEC3AP1-201ENST00000511396 287 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 RNU6-1170P-201ENST00000515974 106 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC6.83□□□□□ -1.32
COL8A1P27658 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
COL8A1P27658 OR5BN1P-201ENST00000532955 829 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC005832.3-201ENST00000537929 631 ntBASIC6.83□□□□□ -1.32
COL8A1P27658 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC6.83□□□□□ -1.32
COL8A1P27658 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.83□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms