Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
HOXC4P09017 ATP5A1P4-201ENST00000556888 1605 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 FYB2-201ENST00000343433 3135 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC4P09017 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
HOXC4P09017 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC4P09017 GNG5P2-201ENST00000372054 207 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC4P09017 RNGTTP1-201ENST00000420965 728 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AL133173.1-201ENST00000423458 397 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.6□□□□□ -1.51
HOXC4P09017 SPRYD7P1-201ENST00000443861 570 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 MEMO1P4-201ENST00000453590 386 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AC093719.1-201ENST00000480427 441 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AC012123.2-201ENST00000485809 248 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.6□□□□□ -1.51
HOXC4P09017 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.6□□□□□ -1.51
HOXC4P09017 IGKV2-18-201ENST00000522607 343 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXC4P09017 HSPE1P2-201ENST00000554777 306 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AGGF1P7-201ENST00000562369 913 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 MIR4311-201ENST00000580794 100 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 SETP3-201ENST00000581726 813 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 AL133481.2-203ENST00000607558 139 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC4P09017 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.6□□□□□ -1.51
HOXC4P09017 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 AC140134.1-201ENST00000511830 3544 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.6□□□□□ -1.51
HOXC4P09017 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HOXC4P09017 ZNF101P1-201ENST00000435701 1720 ntBASIC5.6□□□□□ -1.51
HOXC4P09017 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 XKRY2-202ENST00000623874 1581 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 XKRY-202ENST00000624960 1581 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 MSL3P1-202ENST00000440028 1468 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HOXC4P09017 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HOXC4P09017 RPS26P38-201ENST00000414476 348 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.59□□□□□ -1.51
HOXC4P09017 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.59□□□□□ -1.51
HOXC4P09017 AC108693.1-201ENST00000496068 432 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXC4P09017 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXC4P09017 AL049629.1-201ENST00000534431 648 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXC4P09017 AC090022.1-201ENST00000546569 311 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC4P09017 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.59□□□□□ -1.51
HOXC4P09017 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC4P09017 AL513327.3-201ENST00000602618 469 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC4P09017 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.59□□□□□ -1.51
HOXC4P09017 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
HOXC4P09017 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 AC092070.2-203ENST00000598377 3644 ntBASIC5.59□□□□□ -1.51
HOXC4P09017 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HOXC4P09017 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
HOXC4P09017 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HOXC4P09017 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HOXC4P09017 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HOXC4P09017 AC005725.1-201ENST00000577346 2607 ntBASIC5.59□□□□□ -1.52
HOXC4P09017 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.59□□□□□ -1.52
HOXC4P09017 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HOXC4P09017 CEP128-202ENST00000281129 4461 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 AL137141.1-201ENST00000624622 4836 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
HOXC4P09017 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 CASC19-248ENST00000641674 1356 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 CR788268.1-201ENST00000603931 1809 ntBASIC5.58□□□□□ -1.52
HOXC4P09017 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
HOXC4P09017 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
HOXC4P09017 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HOXC4P09017 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.58□□□□□ -1.52
HOXC4P09017 RNA5SP91-201ENST00000390902 119 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms