Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Ushbp1Q8R370 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Gm27463-201ENSMUST00000183569 57 ntBASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ushbp1Q8R370 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Krt13-201ENSMUST00000007275 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.93■□□□□ 0.62
Ushbp1Q8R370 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Mir5130-201ENSMUST00000175160 84 ntBASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ushbp1Q8R370 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
Ushbp1Q8R370 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ushbp1Q8R370 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Gm43353-201ENSMUST00000199224 1295 ntBASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Ushbp1Q8R370 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Ushbp1Q8R370 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
Ushbp1Q8R370 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Gm14859-201ENSMUST00000117752 357 ntBASIC18.89■□□□□ 0.61
Ushbp1Q8R370 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms