Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ClpbQ60649 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.23■□□□□ 0.19
ClpbQ60649 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.23■□□□□ 0.19
ClpbQ60649 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Gm13559-201ENSMUST00000120476 863 ntBASIC16.23■□□□□ 0.19
ClpbQ60649 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Gm24841-201ENSMUST00000158676 357 ntBASIC16.23■□□□□ 0.19
ClpbQ60649 Gm7977-201ENSMUST00000193787 748 ntBASIC16.23■□□□□ 0.19
ClpbQ60649 Gm29994-201ENSMUST00000195495 1193 ntBASIC16.23■□□□□ 0.19
ClpbQ60649 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
ClpbQ60649 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
ClpbQ60649 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
ClpbQ60649 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
ClpbQ60649 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
ClpbQ60649 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
ClpbQ60649 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC16.22■□□□□ 0.19
ClpbQ60649 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
ClpbQ60649 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.22■□□□□ 0.19
ClpbQ60649 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC16.22■□□□□ 0.19
ClpbQ60649 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
ClpbQ60649 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
ClpbQ60649 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ClpbQ60649 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ClpbQ60649 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC16.21■□□□□ 0.19
ClpbQ60649 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
ClpbQ60649 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
ClpbQ60649 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC16.21■□□□□ 0.19
ClpbQ60649 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC16.21■□□□□ 0.19
ClpbQ60649 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC16.21■□□□□ 0.19
ClpbQ60649 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 AC159205.6-201ENSMUST00000224935 887 ntBASIC16.21■□□□□ 0.19
ClpbQ60649 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.21■□□□□ 0.19
ClpbQ60649 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
ClpbQ60649 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
ClpbQ60649 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
ClpbQ60649 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
ClpbQ60649 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.21■□□□□ 0.18
ClpbQ60649 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
ClpbQ60649 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
ClpbQ60649 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.18
ClpbQ60649 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC16.2■□□□□ 0.18
ClpbQ60649 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.2■□□□□ 0.18
ClpbQ60649 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
ClpbQ60649 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC16.2■□□□□ 0.18
ClpbQ60649 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
ClpbQ60649 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC16.2■□□□□ 0.18
ClpbQ60649 AC121577.1-201ENSMUST00000227302 707 ntBASIC16.2■□□□□ 0.18
ClpbQ60649 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
ClpbQ60649 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
ClpbQ60649 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
ClpbQ60649 Gm8668-201ENSMUST00000120559 1447 ntBASIC16.19■□□□□ 0.18
ClpbQ60649 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.19■□□□□ 0.18
ClpbQ60649 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
ClpbQ60649 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
ClpbQ60649 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
ClpbQ60649 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC16.19■□□□□ 0.18
ClpbQ60649 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
ClpbQ60649 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 20.7 ms