Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Msh3P13705 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Msh3P13705 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Msh3P13705 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Msh3P13705 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.58■□□□□ 0.56
Msh3P13705 Gm7889-201ENSMUST00000185591 958 ntBASIC18.58■□□□□ 0.56
Msh3P13705 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Msh3P13705 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
Msh3P13705 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
Msh3P13705 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Msh3P13705 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Msh3P13705 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Msh3P13705 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Msh3P13705 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC18.56■□□□□ 0.56
Msh3P13705 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Atp5g1-202ENSMUST00000107684 596 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.56■□□□□ 0.56
Msh3P13705 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.56■□□□□ 0.56
Msh3P13705 Gm45058-201ENSMUST00000205810 766 ntBASIC18.56■□□□□ 0.56
Msh3P13705 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.56■□□□□ 0.56
Msh3P13705 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.56■□□□□ 0.56
Msh3P13705 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Msh3P13705 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC18.55■□□□□ 0.56
Msh3P13705 Gm18115-201ENSMUST00000221209 621 ntBASIC18.55■□□□□ 0.56
Msh3P13705 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Msh3P13705 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
Msh3P13705 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Msh3P13705 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Phf7-203ENSMUST00000226565 1971 ntBASIC18.55■□□□□ 0.56
Msh3P13705 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Msh3P13705 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.54■□□□□ 0.56
Msh3P13705 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
Msh3P13705 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Msh3P13705 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Gm3272-201ENSMUST00000181181 1229 ntBASIC18.54■□□□□ 0.56
Msh3P13705 Mir1668-201ENSMUST00000184114 107 ntBASIC18.54■□□□□ 0.56
Msh3P13705 Gm44450-201ENSMUST00000199528 114 ntBASIC18.54■□□□□ 0.56
Msh3P13705 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.54■□□□□ 0.56
Msh3P13705 AC159205.6-201ENSMUST00000224935 887 ntBASIC18.54■□□□□ 0.56
Msh3P13705 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Gm10566-201ENSMUST00000086739 996 ntBASIC18.54■□□□□ 0.56
Msh3P13705 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Msh3P13705 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC18.53■□□□□ 0.56
Msh3P13705 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Msh3P13705 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Msh3P13705 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.53■□□□□ 0.56
Msh3P13705 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.53■□□□□ 0.56
Msh3P13705 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
Msh3P13705 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Gm7213-201ENSMUST00000215977 950 ntBASIC18.53■□□□□ 0.56
Msh3P13705 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC18.53■□□□□ 0.56
Msh3P13705 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Msh3P13705 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms